Results 1 - 20 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31253 | 3' | -51.7 | NC_006560.1 | + | 103022 | 0.65 | 0.992312 |
Target: 5'- cUCCGCGCccGGucgacgcGCGGGGcGCGg -3' miRNA: 3'- -GGGCGCGa-CUuauuaauUGCCCC-CGC- -5' |
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31253 | 3' | -51.7 | NC_006560.1 | + | 32588 | 0.66 | 0.987659 |
Target: 5'- cCCCGCag-GGAcacGGggGGCGGGGGCu -3' miRNA: 3'- -GGGCGcgaCUUa--UUaaUUGCCCCCGc -5' |
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31253 | 3' | -51.7 | NC_006560.1 | + | 118018 | 0.66 | 0.989127 |
Target: 5'- gCCGCGgcgcacCUGGcgGcggggcucGGCGGGGGCGg -3' miRNA: 3'- gGGCGC------GACUuaUuaa-----UUGCCCCCGC- -5' |
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31253 | 3' | -51.7 | NC_006560.1 | + | 150000 | 0.66 | 0.986043 |
Target: 5'- gCCGCGCUcGGGacc---GCGGGcGGCGc -3' miRNA: 3'- gGGCGCGA-CUUauuaauUGCCC-CCGC- -5' |
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31253 | 3' | -51.7 | NC_006560.1 | + | 66048 | 0.66 | 0.986043 |
Target: 5'- gUCgGCGUUGc--GAUU--CGGGGGCGg -3' miRNA: 3'- -GGgCGCGACuuaUUAAuuGCCCCCGC- -5' |
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31253 | 3' | -51.7 | NC_006560.1 | + | 102775 | 0.66 | 0.989127 |
Target: 5'- gCUCGCgGCaaggggggggUGggUGGaaGACGGGGGUGc -3' miRNA: 3'- -GGGCG-CG----------ACuuAUUaaUUGCCCCCGC- -5' |
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31253 | 3' | -51.7 | NC_006560.1 | + | 107237 | 0.66 | 0.987659 |
Target: 5'- gCCGCGacCUGGGgcucg--UGGGGGCGg -3' miRNA: 3'- gGGCGC--GACUUauuaauuGCCCCCGC- -5' |
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31253 | 3' | -51.7 | NC_006560.1 | + | 118490 | 0.66 | 0.989127 |
Target: 5'- gCCCGCGCUcgcucgugGAGUGGcUGgaccGCGGGugggaGGCGc -3' miRNA: 3'- -GGGCGCGA--------CUUAUUaAU----UGCCC-----CCGC- -5' |
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31253 | 3' | -51.7 | NC_006560.1 | + | 3411 | 0.66 | 0.989127 |
Target: 5'- -gCGCGCcGGcgGGcgGGCGGcGGGCGc -3' miRNA: 3'- ggGCGCGaCUuaUUaaUUGCC-CCCGC- -5' |
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31253 | 3' | -51.7 | NC_006560.1 | + | 70599 | 0.66 | 0.987505 |
Target: 5'- gCCCGCGCcuccaagcugcUGGCGGGGGa- -3' miRNA: 3'- -GGGCGCGacuuauua---AUUGCCCCCgc -5' |
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31253 | 3' | -51.7 | NC_006560.1 | + | 74040 | 0.66 | 0.985701 |
Target: 5'- aCCUGCuGCgGGAgcugcugcAGCGGGGGUGc -3' miRNA: 3'- -GGGCG-CGaCUUauuaa---UUGCCCCCGC- -5' |
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31253 | 3' | -51.7 | NC_006560.1 | + | 117696 | 0.66 | 0.987659 |
Target: 5'- -aCGCGCUGGGggaGGUacUGGCGccugcggucccGGGGCGg -3' miRNA: 3'- ggGCGCGACUUa--UUA--AUUGC-----------CCCCGC- -5' |
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31253 | 3' | -51.7 | NC_006560.1 | + | 76847 | 0.66 | 0.986043 |
Target: 5'- gCCaagaGCGCcGAGcg---GGCGGGGGCc -3' miRNA: 3'- -GGg---CGCGaCUUauuaaUUGCCCCCGc -5' |
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31253 | 3' | -51.7 | NC_006560.1 | + | 110328 | 0.66 | 0.987659 |
Target: 5'- gCCGCGCaGGA-----GACGuuuGGGGCGg -3' miRNA: 3'- gGGCGCGaCUUauuaaUUGC---CCCCGC- -5' |
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31253 | 3' | -51.7 | NC_006560.1 | + | 14198 | 0.66 | 0.989127 |
Target: 5'- gCCCaGgGCgugGggUGGUcgGGCGGGGcGCc -3' miRNA: 3'- -GGG-CgCGa--CuuAUUAa-UUGCCCC-CGc -5' |
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31253 | 3' | -51.7 | NC_006560.1 | + | 142273 | 0.66 | 0.989127 |
Target: 5'- cCCCG-GCaaccgGGAUAAaaGGCGGcGGGCGc -3' miRNA: 3'- -GGGCgCGa----CUUAUUaaUUGCC-CCCGC- -5' |
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31253 | 3' | -51.7 | NC_006560.1 | + | 68538 | 0.66 | 0.986544 |
Target: 5'- aCCCGCGCgccucGAGccccgccccgGGGGGCGc -3' miRNA: 3'- -GGGCGCGa----CUUauuaauug--CCCCCGC- -5' |
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31253 | 3' | -51.7 | NC_006560.1 | + | 73164 | 0.66 | 0.98687 |
Target: 5'- gCCCGCaCgcacgccggcGCGGGGGCGg -3' miRNA: 3'- -GGGCGcGacuuauuaauUGCCCCCGC- -5' |
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31253 | 3' | -51.7 | NC_006560.1 | + | 25785 | 0.66 | 0.989127 |
Target: 5'- gCCGCGUcGAucgGAgga--GGGGGCGc -3' miRNA: 3'- gGGCGCGaCUua-UUaauugCCCCCGC- -5' |
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31253 | 3' | -51.7 | NC_006560.1 | + | 26875 | 0.66 | 0.986043 |
Target: 5'- gCCCGUgGCgGGAgagcGAgaccGACGGGGGCc -3' miRNA: 3'- -GGGCG-CGaCUUa---UUaa--UUGCCCCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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