Results 21 - 40 of 306 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31254 | 5' | -67.8 | NC_006560.1 | + | 71967 | 0.66 | 0.431532 |
Target: 5'- gGGCuCGCCGGCCUUCGucgcgaaggugcGGGC-CGGGGa -3' miRNA: 3'- -CUG-GUGGCUGGGGGC------------CCCGcGCCCCc -5' |
|||||||
31254 | 5' | -67.8 | NC_006560.1 | + | 85242 | 0.66 | 0.431532 |
Target: 5'- --aCGCCGGCgCCCGcGGCGCGGa-- -3' miRNA: 3'- cugGUGGCUGgGGGCcCCGCGCCccc -5' |
|||||||
31254 | 5' | -67.8 | NC_006560.1 | + | 25895 | 0.66 | 0.431532 |
Target: 5'- gGGCCGCgCG-CCUCCgauGGGGCGCGcgcacGGGc -3' miRNA: 3'- -CUGGUG-GCuGGGGG---CCCCGCGCc----CCC- -5' |
|||||||
31254 | 5' | -67.8 | NC_006560.1 | + | 131158 | 0.66 | 0.430716 |
Target: 5'- -cCCGCgCGGCUCUgGGcGGCggccgccGCGGGGGc -3' miRNA: 3'- cuGGUG-GCUGGGGgCC-CCG-------CGCCCCC- -5' |
|||||||
31254 | 5' | -67.8 | NC_006560.1 | + | 29349 | 0.66 | 0.429087 |
Target: 5'- cGGCCuCgGAgCCCCGGGuCGCuccuccgcccagguGGGGGu -3' miRNA: 3'- -CUGGuGgCUgGGGGCCCcGCG--------------CCCCC- -5' |
|||||||
31254 | 5' | -67.8 | NC_006560.1 | + | 31124 | 0.66 | 0.423414 |
Target: 5'- cGGgCGCCGggggcGCCUCCGGcuCGCGGGGa -3' miRNA: 3'- -CUgGUGGC-----UGGGGGCCccGCGCCCCc -5' |
|||||||
31254 | 5' | -67.8 | NC_006560.1 | + | 30079 | 0.66 | 0.423414 |
Target: 5'- gGACgCACCGcCuCCCCGGGGagGCGGccccGGc -3' miRNA: 3'- -CUG-GUGGCuG-GGGGCCCCg-CGCCc---CC- -5' |
|||||||
31254 | 5' | -67.8 | NC_006560.1 | + | 15685 | 0.66 | 0.423414 |
Target: 5'- cGGCCgggACCGAgCgCCacaGGGGCGCcgcaGGGGc -3' miRNA: 3'- -CUGG---UGGCUgG-GGg--CCCCGCGc---CCCC- -5' |
|||||||
31254 | 5' | -67.8 | NC_006560.1 | + | 123293 | 0.66 | 0.423414 |
Target: 5'- aGCCGCCG--CCCCGGGGUucCGGGa- -3' miRNA: 3'- cUGGUGGCugGGGGCCCCGc-GCCCcc -5' |
|||||||
31254 | 5' | -67.8 | NC_006560.1 | + | 4979 | 0.66 | 0.423414 |
Target: 5'- cGCCuCCGAgCCggguccgagCCGGGG-GCGGGGu -3' miRNA: 3'- cUGGuGGCUgGG---------GGCCCCgCGCCCCc -5' |
|||||||
31254 | 5' | -67.8 | NC_006560.1 | + | 75805 | 0.66 | 0.423414 |
Target: 5'- gGGCUGCUGGCCCUCucgcaGGC-CGGGGGc -3' miRNA: 3'- -CUGGUGGCUGGGGGcc---CCGcGCCCCC- -5' |
|||||||
31254 | 5' | -67.8 | NC_006560.1 | + | 88870 | 0.66 | 0.423414 |
Target: 5'- cGCgGCCGugCCCCGGagacGGC-CGGGcgaGGg -3' miRNA: 3'- cUGgUGGCugGGGGCC----CCGcGCCC---CC- -5' |
|||||||
31254 | 5' | -67.8 | NC_006560.1 | + | 19555 | 0.66 | 0.423414 |
Target: 5'- -uCCGgCGGcCCCCCGGaGGCGgcacCGGGcGGc -3' miRNA: 3'- cuGGUgGCU-GGGGGCC-CCGC----GCCC-CC- -5' |
|||||||
31254 | 5' | -67.8 | NC_006560.1 | + | 99148 | 0.66 | 0.422607 |
Target: 5'- -gUCGCCGGCCUcgCCGGGG-GCGGccgucccGGGc -3' miRNA: 3'- cuGGUGGCUGGG--GGCCCCgCGCC-------CCC- -5' |
|||||||
31254 | 5' | -67.8 | NC_006560.1 | + | 15845 | 0.66 | 0.420996 |
Target: 5'- -gUCGCCGACCaggaUcucguagucguacgCGGcGGCGUGGGGGc -3' miRNA: 3'- cuGGUGGCUGGg---G--------------GCC-CCGCGCCCCC- -5' |
|||||||
31254 | 5' | -67.8 | NC_006560.1 | + | 20519 | 0.66 | 0.420996 |
Target: 5'- --gCACCGGCgCCUGGagccguucagaaccGGCgaggGCGGGGGg -3' miRNA: 3'- cugGUGGCUGgGGGCC--------------CCG----CGCCCCC- -5' |
|||||||
31254 | 5' | -67.8 | NC_006560.1 | + | 150325 | 0.66 | 0.415387 |
Target: 5'- cGGCCccccgcGCCGcguuUCCCggCGGGGCgguucggcgGCGGGGGg -3' miRNA: 3'- -CUGG------UGGCu---GGGG--GCCCCG---------CGCCCCC- -5' |
|||||||
31254 | 5' | -67.8 | NC_006560.1 | + | 131217 | 0.66 | 0.415387 |
Target: 5'- --gCGCCGGCCCgcgacgCCGGGGCuGCGGcugcuGGa -3' miRNA: 3'- cugGUGGCUGGG------GGCCCCG-CGCCc----CC- -5' |
|||||||
31254 | 5' | -67.8 | NC_006560.1 | + | 47164 | 0.66 | 0.415387 |
Target: 5'- --gCGCCGAgCUCgCGaGGCGCGaGGGGg -3' miRNA: 3'- cugGUGGCUgGGG-GCcCCGCGC-CCCC- -5' |
|||||||
31254 | 5' | -67.8 | NC_006560.1 | + | 33655 | 0.66 | 0.415387 |
Target: 5'- cGGCCGCgGGCCgcuuaggcgagCCCGgcGGGCgucuGCGGGGa -3' miRNA: 3'- -CUGGUGgCUGG-----------GGGC--CCCG----CGCCCCc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home