miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31255 5' -57 NC_006560.1 + 67646 0.66 0.903599
Target:  5'- -cCGGAGCCGGag-CCGA-GCCgCGCc -3'
miRNA:   3'- guGCCUUGGCCauaGGCUgCGG-GUGc -5'
31255 5' -57 NC_006560.1 + 74802 0.66 0.903599
Target:  5'- uGCGGGACCuGUuccCCGcgGCGCCCGa- -3'
miRNA:   3'- gUGCCUUGGcCAua-GGC--UGCGGGUgc -5'
31255 5' -57 NC_006560.1 + 30391 0.66 0.903599
Target:  5'- aGCGGAccccACCuuccgcCCGGCGCCCGCc -3'
miRNA:   3'- gUGCCU----UGGccaua-GGCUGCGGGUGc -5'
31255 5' -57 NC_006560.1 + 148509 0.66 0.903599
Target:  5'- gGCGGGA-CGGcgGUCCGACGgCgACu -3'
miRNA:   3'- gUGCCUUgGCCa-UAGGCUGCgGgUGc -5'
31255 5' -57 NC_006560.1 + 9603 0.66 0.903599
Target:  5'- aGCGGAGCgCGGgg-CgCGGC-CCCugGg -3'
miRNA:   3'- gUGCCUUG-GCCauaG-GCUGcGGGugC- -5'
31255 5' -57 NC_006560.1 + 51368 0.66 0.903599
Target:  5'- gACGGAgGCCGGccgCCGcGCGCUCgGCGa -3'
miRNA:   3'- gUGCCU-UGGCCauaGGC-UGCGGG-UGC- -5'
31255 5' -57 NC_006560.1 + 68286 0.66 0.903599
Target:  5'- uCGCGGAGaaccucCCGGgccugCUGGCGCaCCGCc -3'
miRNA:   3'- -GUGCCUU------GGCCaua--GGCUGCG-GGUGc -5'
31255 5' -57 NC_006560.1 + 103086 0.66 0.903599
Target:  5'- gGgGGGACCGGUc-CCGcC-CCCGCGg -3'
miRNA:   3'- gUgCCUUGGCCAuaGGCuGcGGGUGC- -5'
31255 5' -57 NC_006560.1 + 134816 0.66 0.903599
Target:  5'- cCACGGucGCCaGGUcccggggcaGggCGugGCCCGCGa -3'
miRNA:   3'- -GUGCCu-UGG-CCA---------UagGCugCGGGUGC- -5'
31255 5' -57 NC_006560.1 + 67721 0.66 0.903599
Target:  5'- -cCGGAGCCGGag-CCGA-GCCgCGCc -3'
miRNA:   3'- guGCCUUGGCCauaGGCUgCGG-GUGc -5'
31255 5' -57 NC_006560.1 + 146573 0.66 0.903599
Target:  5'- cCGC-GAGCCGGaggcgcccCCGGCGCCCGa- -3'
miRNA:   3'- -GUGcCUUGGCCaua-----GGCUGCGGGUgc -5'
31255 5' -57 NC_006560.1 + 23620 0.66 0.903599
Target:  5'- gCGCGGcGCCG----CCG-CGCCCGCGc -3'
miRNA:   3'- -GUGCCuUGGCcauaGGCuGCGGGUGC- -5'
31255 5' -57 NC_006560.1 + 124339 0.66 0.903599
Target:  5'- cCGCGGGuugcuGCgGGgcGUCCGGCGacCCCugGa -3'
miRNA:   3'- -GUGCCU-----UGgCCa-UAGGCUGC--GGGugC- -5'
31255 5' -57 NC_006560.1 + 18490 0.66 0.899872
Target:  5'- uCGCGGAcgccGCCGccugcuUCCGcgcccucugcggcccGCGCCCGCGc -3'
miRNA:   3'- -GUGCCU----UGGCcau---AGGC---------------UGCGGGUGC- -5'
31255 5' -57 NC_006560.1 + 122862 0.66 0.897979
Target:  5'- -cCGGGACCGGgagugguacaccgCCGA-GCUCGCGg -3'
miRNA:   3'- guGCCUUGGCCaua----------GGCUgCGGGUGC- -5'
31255 5' -57 NC_006560.1 + 133175 0.66 0.897344
Target:  5'- -uCGGAGgCGGUGag-GGCGUCCGCGg -3'
miRNA:   3'- guGCCUUgGCCAUaggCUGCGGGUGC- -5'
31255 5' -57 NC_006560.1 + 135232 0.66 0.897344
Target:  5'- uCGCuGGACCGGacgacGUUauaGACGCCCugGc -3'
miRNA:   3'- -GUGcCUUGGCCa----UAGg--CUGCGGGugC- -5'
31255 5' -57 NC_006560.1 + 22009 0.66 0.897344
Target:  5'- gCGCGGGcucGCCGGacccggaCGACGgCCCGCc -3'
miRNA:   3'- -GUGCCU---UGGCCauag---GCUGC-GGGUGc -5'
31255 5' -57 NC_006560.1 + 118284 0.66 0.897344
Target:  5'- gGCGu--CCGGgcUCCGccaggGCGCCCugGc -3'
miRNA:   3'- gUGCcuuGGCCauAGGC-----UGCGGGugC- -5'
31255 5' -57 NC_006560.1 + 79849 0.66 0.897344
Target:  5'- gCGCGGAccgaGCCGGg--CCGccccCGCCCcCGc -3'
miRNA:   3'- -GUGCCU----UGGCCauaGGCu---GCGGGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.