miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31256 3' -63.8 NC_006560.1 + 30514 0.65 0.610775
Target:  5'- cGGCGGgggagggggaGGGGGCg-GGGGGAGagggagggaggcgcCCCGa -3'
miRNA:   3'- -CCGCCa---------CCUCCGgaUCCCCUC--------------GGGCc -5'
31256 3' -63.8 NC_006560.1 + 99964 0.66 0.60789
Target:  5'- cGCGGUGcGccgucgcucgcgucgGGGCCUGGGuccgucGcGCCCGGg -3'
miRNA:   3'- cCGCCAC-C---------------UCCGGAUCCc-----CuCGGGCC- -5'
31256 3' -63.8 NC_006560.1 + 75155 0.66 0.60789
Target:  5'- cGGCGGUGcggcgggagaaccccGAGGCCgAGGGcGAccGCgCCGc -3'
miRNA:   3'- -CCGCCAC---------------CUCCGGaUCCC-CU--CG-GGCc -5'
31256 3' -63.8 NC_006560.1 + 77769 0.66 0.604045
Target:  5'- uGGCGcUGGuGGCC---GGGAcCCCGGa -3'
miRNA:   3'- -CCGCcACCuCCGGaucCCCUcGGGCC- -5'
31256 3' -63.8 NC_006560.1 + 68427 0.66 0.604045
Target:  5'- aGGCGGcgGGAcugcgcaccgcGGCCgcccuGGGGccGGCgCGGa -3'
miRNA:   3'- -CCGCCa-CCU-----------CCGGau---CCCC--UCGgGCC- -5'
31256 3' -63.8 NC_006560.1 + 31946 0.66 0.604045
Target:  5'- cGCGGgGGGcGGCCgGGcGGGGGCgCGa -3'
miRNA:   3'- cCGCCaCCU-CCGGaUC-CCCUCGgGCc -5'
31256 3' -63.8 NC_006560.1 + 83183 0.66 0.604045
Target:  5'- cGGaCGGacgcGGGGCUgccGGGGcuGCCCGGg -3'
miRNA:   3'- -CC-GCCac--CUCCGGau-CCCCu-CGGGCC- -5'
31256 3' -63.8 NC_006560.1 + 17451 0.66 0.604045
Target:  5'- cGCGGUcGAGGCgCUccagcaccuccGGGGuGAGUCCGc -3'
miRNA:   3'- cCGCCAcCUCCG-GA-----------UCCC-CUCGGGCc -5'
31256 3' -63.8 NC_006560.1 + 102383 0.66 0.604045
Target:  5'- cGGCGGccgcgcccgGGAGGCCcucGGcGGCCuCGGg -3'
miRNA:   3'- -CCGCCa--------CCUCCGGaucCCcUCGG-GCC- -5'
31256 3' -63.8 NC_006560.1 + 132223 0.66 0.604045
Target:  5'- aGGCGGUGuugcgcGGGGcCCUGGcGGGGCUgUGGg -3'
miRNA:   3'- -CCGCCAC------CUCC-GGAUCcCCUCGG-GCC- -5'
31256 3' -63.8 NC_006560.1 + 16537 0.66 0.602124
Target:  5'- cGGCGcUGGGGcGCCgcgcgccaucgaAGGuGaGGGCCCGGc -3'
miRNA:   3'- -CCGCcACCUC-CGGa-----------UCC-C-CUCGGGCC- -5'
31256 3' -63.8 NC_006560.1 + 99289 0.66 0.594448
Target:  5'- cGGCGGcUGG-GGUC-GGGGGAgguggugggGCgCGGg -3'
miRNA:   3'- -CCGCC-ACCuCCGGaUCCCCU---------CGgGCC- -5'
31256 3' -63.8 NC_006560.1 + 36112 0.66 0.594448
Target:  5'- cGGCGGgcaccGGGGCCgccgccgccGGGGucGAGCCgGGc -3'
miRNA:   3'- -CCGCCac---CUCCGGa--------UCCC--CUCGGgCC- -5'
31256 3' -63.8 NC_006560.1 + 99225 0.66 0.594448
Target:  5'- cGGCGGgcuGcGGCCcggaaacgAGGGGGGCguuggCCGGa -3'
miRNA:   3'- -CCGCCac-CuCCGGa-------UCCCCUCG-----GGCC- -5'
31256 3' -63.8 NC_006560.1 + 15767 0.66 0.59349
Target:  5'- gGGCGacuccGGGCCcGGGGGccggcagGGCCCGGc -3'
miRNA:   3'- -CCGCcacc-UCCGGaUCCCC-------UCGGGCC- -5'
31256 3' -63.8 NC_006560.1 + 81234 0.66 0.588701
Target:  5'- cGGCGGagGGGGGCgagaccgcgcagagaCggagcgcgAGGGGcacacuggcGGCCCGGc -3'
miRNA:   3'- -CCGCCa-CCUCCG---------------Ga-------UCCCC---------UCGGGCC- -5'
31256 3' -63.8 NC_006560.1 + 126921 0.66 0.584875
Target:  5'- cGCGGUGGuGGGCC--GGGGccgcGUCCGc -3'
miRNA:   3'- cCGCCACC-UCCGGauCCCCu---CGGGCc -5'
31256 3' -63.8 NC_006560.1 + 83344 0.66 0.584875
Target:  5'- gGGCGa-GGAGGgCgcGGGcGGcGGCCCGGg -3'
miRNA:   3'- -CCGCcaCCUCCgGa-UCC-CC-UCGGGCC- -5'
31256 3' -63.8 NC_006560.1 + 52599 0.66 0.575332
Target:  5'- aGGCGGUGGcgacgggcGGGCUgcGGauccccgaGAGCCCGc -3'
miRNA:   3'- -CCGCCACC--------UCCGGauCCc-------CUCGGGCc -5'
31256 3' -63.8 NC_006560.1 + 149201 0.66 0.575332
Target:  5'- cGCcaUGGcGGCgaGGGGGcgcGGCCCGGg -3'
miRNA:   3'- cCGccACCuCCGgaUCCCC---UCGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.