miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31256 5' -54.9 NC_006560.1 + 99461 0.66 0.949187
Target:  5'- gCCCCGGg---CGCcGGcGCCggacggGCGCGCc -3'
miRNA:   3'- -GGGGCUagaaGUGaUC-CGGa-----CGUGCG- -5'
31256 5' -54.9 NC_006560.1 + 69724 0.66 0.949187
Target:  5'- cCCUCGGUCcUC-CU-GGCCgccGcCACGCg -3'
miRNA:   3'- -GGGGCUAGaAGuGAuCCGGa--C-GUGCG- -5'
31256 5' -54.9 NC_006560.1 + 47126 0.66 0.949187
Target:  5'- aUCCCaGAcCgUCGCgccGGCC-GCACGCg -3'
miRNA:   3'- -GGGG-CUaGaAGUGau-CCGGaCGUGCG- -5'
31256 5' -54.9 NC_006560.1 + 94021 0.66 0.949187
Target:  5'- gCCU--UCUUCGCggaguccaUGGGCCU-CGCGCg -3'
miRNA:   3'- gGGGcuAGAAGUG--------AUCCGGAcGUGCG- -5'
31256 5' -54.9 NC_006560.1 + 1332 0.66 0.944851
Target:  5'- cCCCCGGg---CGCccgacGGGaCCgUGCGCGCg -3'
miRNA:   3'- -GGGGCUagaaGUGa----UCC-GG-ACGUGCG- -5'
31256 5' -54.9 NC_006560.1 + 119971 0.66 0.944851
Target:  5'- gCCCUGAcCUUCACgc-GCCUcaaGCcCGCg -3'
miRNA:   3'- -GGGGCUaGAAGUGaucCGGA---CGuGCG- -5'
31256 5' -54.9 NC_006560.1 + 125510 0.66 0.944851
Target:  5'- cCCCCGc-CUcCGCgccGGCCgcggUGCGCGCc -3'
miRNA:   3'- -GGGGCuaGAaGUGau-CCGG----ACGUGCG- -5'
31256 5' -54.9 NC_006560.1 + 60038 0.66 0.944851
Target:  5'- aCCCGAUCUUCgucaccgaccGCgGGGUggaCUGCAC-Cg -3'
miRNA:   3'- gGGGCUAGAAG----------UGaUCCG---GACGUGcG- -5'
31256 5' -54.9 NC_006560.1 + 15428 0.66 0.944851
Target:  5'- gCCCCGggCggCGC---GCCcgGCGCGCg -3'
miRNA:   3'- -GGGGCuaGaaGUGaucCGGa-CGUGCG- -5'
31256 5' -54.9 NC_006560.1 + 78628 0.66 0.944851
Target:  5'- gCCCUG-UCcgCGCUGGucGCC-GCGCGCc -3'
miRNA:   3'- -GGGGCuAGaaGUGAUC--CGGaCGUGCG- -5'
31256 5' -54.9 NC_006560.1 + 63147 0.66 0.944851
Target:  5'- gCCCCGugcaggCACaGGGCgUUGCugGCc -3'
miRNA:   3'- -GGGGCuagaa-GUGaUCCG-GACGugCG- -5'
31256 5' -54.9 NC_006560.1 + 106948 0.66 0.944851
Target:  5'- gCCUCGGcacUCacgCGCUGGGCC--CACGCc -3'
miRNA:   3'- -GGGGCU---AGaa-GUGAUCCGGacGUGCG- -5'
31256 5' -54.9 NC_006560.1 + 67974 0.66 0.944851
Target:  5'- cCCCCGAgga-CGCggGGGCC-GCgGCGCc -3'
miRNA:   3'- -GGGGCUagaaGUGa-UCCGGaCG-UGCG- -5'
31256 5' -54.9 NC_006560.1 + 74647 0.66 0.944405
Target:  5'- gCCCGAcgCcgCGC-AGGCCgcgcccccggaggUGCGCGCc -3'
miRNA:   3'- gGGGCUa-GaaGUGaUCCGG-------------ACGUGCG- -5'
31256 5' -54.9 NC_006560.1 + 44316 0.66 0.942137
Target:  5'- -gCCGGUCUUCucggggcgcucugcgGCUGGGgg-GCGCGCc -3'
miRNA:   3'- ggGGCUAGAAG---------------UGAUCCggaCGUGCG- -5'
31256 5' -54.9 NC_006560.1 + 73138 0.66 0.94028
Target:  5'- uCCUCGccuUCcUCAUcgaaaacgGGGCCcGCACGCa -3'
miRNA:   3'- -GGGGCu--AGaAGUGa-------UCCGGaCGUGCG- -5'
31256 5' -54.9 NC_006560.1 + 833 0.66 0.94028
Target:  5'- aUCCGA-CgccCACgAGGCCccGCGCGCg -3'
miRNA:   3'- gGGGCUaGaa-GUGaUCCGGa-CGUGCG- -5'
31256 5' -54.9 NC_006560.1 + 63468 0.66 0.94028
Target:  5'- aCCCCGcUCU--GCUGGGC--GUugGCg -3'
miRNA:   3'- -GGGGCuAGAagUGAUCCGgaCGugCG- -5'
31256 5' -54.9 NC_006560.1 + 15160 0.66 0.939338
Target:  5'- cCCCCGGcgUCUUCGCggucgggaucacGGGCgU-CGCGCc -3'
miRNA:   3'- -GGGGCU--AGAAGUGa-----------UCCGgAcGUGCG- -5'
31256 5' -54.9 NC_006560.1 + 53460 0.66 0.935472
Target:  5'- cCUCCuGUCggCGCcgcccgAGGCCgcggcgGCGCGCg -3'
miRNA:   3'- -GGGGcUAGaaGUGa-----UCCGGa-----CGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.