miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31257 3' -54.1 NC_006560.1 + 23511 0.66 0.965967
Target:  5'- cGGaGUGCCUGGCG---GUCUgCcGCGCc -3'
miRNA:   3'- -CC-CAUGGACCGCgagCAGAaGaUGCG- -5'
31257 3' -54.1 NC_006560.1 + 121940 0.66 0.965967
Target:  5'- cGGgcCCgGGCGCgCGgc-UCUGCGCc -3'
miRNA:   3'- cCCauGGaCCGCGaGCagaAGAUGCG- -5'
31257 3' -54.1 NC_006560.1 + 7309 0.66 0.965967
Target:  5'- cGGaGUGCCgcgggGGCGUggagaugcgCGUCUaUCgccgGCGCc -3'
miRNA:   3'- -CC-CAUGGa----CCGCGa--------GCAGA-AGa---UGCG- -5'
31257 3' -54.1 NC_006560.1 + 131389 0.66 0.962647
Target:  5'- cGGUGCUggcgGGCGCUgGcCgcggACGCg -3'
miRNA:   3'- cCCAUGGa---CCGCGAgCaGaagaUGCG- -5'
31257 3' -54.1 NC_006560.1 + 124387 0.66 0.959108
Target:  5'- cGGGgcccGCCUGG-GCUaucUCUUCU-CGCu -3'
miRNA:   3'- -CCCa---UGGACCgCGAgc-AGAAGAuGCG- -5'
31257 3' -54.1 NC_006560.1 + 58629 0.66 0.959108
Target:  5'- aGGGccGCCUGGuCGgaCuUCUUCaGCGCc -3'
miRNA:   3'- -CCCa-UGGACC-GCgaGcAGAAGaUGCG- -5'
31257 3' -54.1 NC_006560.1 + 99909 0.66 0.959108
Target:  5'- gGGGUucaugucgGCCUcggGGCGCUCGg-----GCGCg -3'
miRNA:   3'- -CCCA--------UGGA---CCGCGAGCagaagaUGCG- -5'
31257 3' -54.1 NC_006560.1 + 118564 0.66 0.955345
Target:  5'- uGGaGCC-GGCGCUCGg--UCU-CGCu -3'
miRNA:   3'- cCCaUGGaCCGCGAGCagaAGAuGCG- -5'
31257 3' -54.1 NC_006560.1 + 39934 0.66 0.955345
Target:  5'- uGGGUGgCUGGgGCcCGUCgg-UAgGCg -3'
miRNA:   3'- -CCCAUgGACCgCGaGCAGaagAUgCG- -5'
31257 3' -54.1 NC_006560.1 + 54926 0.67 0.947131
Target:  5'- cGGGgGCCggGGCGgccaUCGUCggggCUcGCGCg -3'
miRNA:   3'- -CCCaUGGa-CCGCg---AGCAGaa--GA-UGCG- -5'
31257 3' -54.1 NC_006560.1 + 12886 0.67 0.947131
Target:  5'- cGGGaGCagGGUGCUCGUggUCgGCGCc -3'
miRNA:   3'- -CCCaUGgaCCGCGAGCAgaAGaUGCG- -5'
31257 3' -54.1 NC_006560.1 + 137157 0.67 0.947131
Target:  5'- ----uCCUGGCGCUCGgggCggaggGCGCg -3'
miRNA:   3'- cccauGGACCGCGAGCa--Gaaga-UGCG- -5'
31257 3' -54.1 NC_006560.1 + 137216 0.67 0.937977
Target:  5'- gGGGaGCg-GGCGUUCGaCUUCaagACGCu -3'
miRNA:   3'- -CCCaUGgaCCGCGAGCaGAAGa--UGCG- -5'
31257 3' -54.1 NC_006560.1 + 48684 0.67 0.933042
Target:  5'- cGGcGcGCCUGGCGCgCGUgaugUUUCUGCa- -3'
miRNA:   3'- -CC-CaUGGACCGCGaGCA----GAAGAUGcg -5'
31257 3' -54.1 NC_006560.1 + 66371 0.67 0.933042
Target:  5'- cGGUcACgCUGGCcaGCUCGUC--CUGCGUc -3'
miRNA:   3'- cCCA-UG-GACCG--CGAGCAGaaGAUGCG- -5'
31257 3' -54.1 NC_006560.1 + 11505 0.68 0.924646
Target:  5'- cGGGcGCCggggaGGCGCUCGUCgcccgaccccCGCc -3'
miRNA:   3'- -CCCaUGGa----CCGCGAGCAGaagau-----GCG- -5'
31257 3' -54.1 NC_006560.1 + 36590 0.68 0.922451
Target:  5'- uGGGuUGCCUGugagcCGCUCGga-UCUGCGUc -3'
miRNA:   3'- -CCC-AUGGACc----GCGAGCagaAGAUGCG- -5'
31257 3' -54.1 NC_006560.1 + 67986 0.68 0.922451
Target:  5'- cGGGgGCCgcGGCGC-CGUCgggCgACGCc -3'
miRNA:   3'- -CCCaUGGa-CCGCGaGCAGaa-GaUGCG- -5'
31257 3' -54.1 NC_006560.1 + 3005 0.68 0.916794
Target:  5'- cGGGgACCUGGCGCauccaggCGgCggCgcgGCGCa -3'
miRNA:   3'- -CCCaUGGACCGCGa------GCaGaaGa--UGCG- -5'
31257 3' -54.1 NC_006560.1 + 46296 0.68 0.910897
Target:  5'- uGGcuCCUGGCGCUCugcGUCgUCgACGCc -3'
miRNA:   3'- cCCauGGACCGCGAG---CAGaAGaUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.