miRNA display CGI


Results 1 - 20 of 302 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31257 5' -64.8 NC_006560.1 + 147282 0.66 0.514135
Target:  5'- cCGGGGCcgggcgGGggGCUcugGCgggCGCCGGGCg- -3'
miRNA:   3'- -GCCCCG------UCuuCGG---CGg--GCGGUCCGag -5'
31257 5' -64.8 NC_006560.1 + 74316 0.66 0.514135
Target:  5'- gCGGGGaCGacGccGCCGCCggcgGCCuGGCUCc -3'
miRNA:   3'- -GCCCC-GU--CuuCGGCGGg---CGGuCCGAG- -5'
31257 5' -64.8 NC_006560.1 + 25953 0.66 0.514135
Target:  5'- gGGGGCGaGGGCCGCggggggcgagggCCGCgGGGggCg -3'
miRNA:   3'- gCCCCGUcUUCGGCG------------GGCGgUCCgaG- -5'
31257 5' -64.8 NC_006560.1 + 118990 0.66 0.514135
Target:  5'- uCGGGGaGGucGCgcggCGCCUGCCGGuGCUg -3'
miRNA:   3'- -GCCCCgUCuuCG----GCGGGCGGUC-CGAg -5'
31257 5' -64.8 NC_006560.1 + 149226 0.66 0.514135
Target:  5'- cCGGGGCGGAccgucgaggGGCgcaucaGCauauccgggcuuCCGCCGGGCg- -3'
miRNA:   3'- -GCCCCGUCU---------UCGg-----CG------------GGCGGUCCGag -5'
31257 5' -64.8 NC_006560.1 + 147220 0.66 0.514135
Target:  5'- gGGGGCcgGGgcGCCuCCCGCuCcuGCUCc -3'
miRNA:   3'- gCCCCG--UCuuCGGcGGGCG-GucCGAG- -5'
31257 5' -64.8 NC_006560.1 + 74356 0.66 0.514135
Target:  5'- gCGGcgccuGGCcGAGGaCgCGCuCCGCCAGGCg- -3'
miRNA:   3'- -GCC-----CCGuCUUC-G-GCG-GGCGGUCCGag -5'
31257 5' -64.8 NC_006560.1 + 64981 0.66 0.514135
Target:  5'- gCGGGGCc--GGCCGCCgCGgggGGGCUUg -3'
miRNA:   3'- -GCCCCGucuUCGGCGG-GCgg-UCCGAG- -5'
31257 5' -64.8 NC_006560.1 + 9611 0.66 0.514135
Target:  5'- gCGGGGCGcggccccuGggGCCGCgCCGaaGGGgUg -3'
miRNA:   3'- -GCCCCGU--------CuuCGGCG-GGCggUCCgAg -5'
31257 5' -64.8 NC_006560.1 + 123272 0.66 0.511349
Target:  5'- gCGGGcaguucugcgucgcGCAGccGCCGCCC-CgGGGUUCc -3'
miRNA:   3'- -GCCC--------------CGUCuuCGGCGGGcGgUCCGAG- -5'
31257 5' -64.8 NC_006560.1 + 81801 0.66 0.511349
Target:  5'- gCGGGGCgcgaaaAGAAGCCcuggaacagcaccgaCCGCCGGuGUUCu -3'
miRNA:   3'- -GCCCCG------UCUUCGGcg-------------GGCGGUC-CGAG- -5'
31257 5' -64.8 NC_006560.1 + 149095 0.66 0.510422
Target:  5'- gGGGGCGGgcGCCGgggcgucCCCGugaauaauucaggaCCAuuGGCUCc -3'
miRNA:   3'- gCCCCGUCuuCGGC-------GGGC--------------GGU--CCGAG- -5'
31257 5' -64.8 NC_006560.1 + 18151 0.66 0.50857
Target:  5'- uGcGGaCGGAAgGCCGCCCGCCcuaauauagcgacauGGGCg- -3'
miRNA:   3'- gCcCC-GUCUU-CGGCGGGCGG---------------UCCGag -5'
31257 5' -64.8 NC_006560.1 + 145917 0.66 0.504873
Target:  5'- gCGGGGgucCAGggGUgGCgCGaguCCAGGCUg -3'
miRNA:   3'- -GCCCC---GUCuuCGgCGgGC---GGUCCGAg -5'
31257 5' -64.8 NC_006560.1 + 12031 0.66 0.504873
Target:  5'- uGGcGGCGGggGCaCGCC-GUCAG-CUCc -3'
miRNA:   3'- gCC-CCGUCuuCG-GCGGgCGGUCcGAG- -5'
31257 5' -64.8 NC_006560.1 + 37241 0.66 0.504873
Target:  5'- gCGGaGGCu---GCUGCCCGUCGcGGaCUCa -3'
miRNA:   3'- -GCC-CCGucuuCGGCGGGCGGU-CC-GAG- -5'
31257 5' -64.8 NC_006560.1 + 20064 0.66 0.504873
Target:  5'- uCGGGGCguuccgacGGggGCgGCUCcguGCCGGGaCUa -3'
miRNA:   3'- -GCCCCG--------UCuuCGgCGGG---CGGUCC-GAg -5'
31257 5' -64.8 NC_006560.1 + 17115 0.66 0.504873
Target:  5'- gGGGGCGGGAGCgggCGCgggaCC-CCAGGUa- -3'
miRNA:   3'- gCCCCGUCUUCG---GCG----GGcGGUCCGag -5'
31257 5' -64.8 NC_006560.1 + 84677 0.66 0.504873
Target:  5'- gGGGGCu---GCUGcCCCGCCugcGGCg- -3'
miRNA:   3'- gCCCCGucuuCGGC-GGGCGGu--CCGag -5'
31257 5' -64.8 NC_006560.1 + 54481 0.66 0.504873
Target:  5'- gCGGGGguGAuGGCagaugCGCagCGCCGGGCccUCg -3'
miRNA:   3'- -GCCCCguCU-UCG-----GCGg-GCGGUCCG--AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.