miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31258 3' -52 NC_006560.1 + 64106 0.66 0.989738
Target:  5'- uGGGC-CGUGCGGGucuGCGGGuucacCAGGUa -3'
miRNA:   3'- uCCUGuGCAUGCCU---UGCUCu----GUUCGc -5'
31258 3' -52 NC_006560.1 + 9592 0.66 0.989738
Target:  5'- gAGG-CGCGgcgaGCGGAgcGCGGGGCGcGGCc -3'
miRNA:   3'- -UCCuGUGCa---UGCCU--UGCUCUGU-UCGc -5'
31258 3' -52 NC_006560.1 + 117452 0.66 0.989738
Target:  5'- gAGGccagcuACgACGUGCGGcGCGAGccCGGGCGu -3'
miRNA:   3'- -UCC------UG-UGCAUGCCuUGCUCu-GUUCGC- -5'
31258 3' -52 NC_006560.1 + 15716 0.66 0.989738
Target:  5'- aGGGGCgGCGggcCGGcACGGGGCcGGCa -3'
miRNA:   3'- -UCCUG-UGCau-GCCuUGCUCUGuUCGc -5'
31258 3' -52 NC_006560.1 + 5164 0.66 0.989738
Target:  5'- cGGGGcCGCGgggGCGGGccGCGGcGAC-GGCGg -3'
miRNA:   3'- -UCCU-GUGCa--UGCCU--UGCU-CUGuUCGC- -5'
31258 3' -52 NC_006560.1 + 3026 0.66 0.989738
Target:  5'- cGGcGGCGCGgcgcaGCGGGccCGAGGCGcggAGCGg -3'
miRNA:   3'- -UC-CUGUGCa----UGCCUu-GCUCUGU---UCGC- -5'
31258 3' -52 NC_006560.1 + 147548 0.66 0.989738
Target:  5'- cGGGCugGcccaUGCGGGcggGCGGGGagaGGGCGc -3'
miRNA:   3'- uCCUGugC----AUGCCU---UGCUCUg--UUCGC- -5'
31258 3' -52 NC_006560.1 + 118419 0.66 0.989738
Target:  5'- cGGGGCGCGgcUACcgcgccccgGGGGCGAGGuccUggGCGa -3'
miRNA:   3'- -UCCUGUGC--AUG---------CCUUGCUCU---GuuCGC- -5'
31258 3' -52 NC_006560.1 + 131382 0.66 0.989738
Target:  5'- gGGGGCGCGgugcugGCGGGcgcuggccGCG-GACGcGCGc -3'
miRNA:   3'- -UCCUGUGCa-----UGCCU--------UGCuCUGUuCGC- -5'
31258 3' -52 NC_006560.1 + 59511 0.66 0.989738
Target:  5'- cGGugACGacgACuGAA-GAGGCGGGCGg -3'
miRNA:   3'- uCCugUGCa--UGcCUUgCUCUGUUCGC- -5'
31258 3' -52 NC_006560.1 + 47827 0.66 0.989738
Target:  5'- aGGGACGgGU--GGAugGGGGCGGGg- -3'
miRNA:   3'- -UCCUGUgCAugCCUugCUCUGUUCgc -5'
31258 3' -52 NC_006560.1 + 130762 0.66 0.989332
Target:  5'- gAGGGCGCGgucGgGGAcguguucgaggugcGCGAGGCGGugcuGCGg -3'
miRNA:   3'- -UCCUGUGCa--UgCCU--------------UGCUCUGUU----CGC- -5'
31258 3' -52 NC_006560.1 + 3389 0.66 0.988914
Target:  5'- cGGGCGCGggcCGGcucuucuugcgcgccGGCG-GGCGGGCGg -3'
miRNA:   3'- uCCUGUGCau-GCC---------------UUGCuCUGUUCGC- -5'
31258 3' -52 NC_006560.1 + 32714 0.66 0.988914
Target:  5'- gAGGGCGCGcggGCccgggguccgucgggGGGGCGGGGCccGGCGc -3'
miRNA:   3'- -UCCUGUGCa--UG---------------CCUUGCUCUGu-UCGC- -5'
31258 3' -52 NC_006560.1 + 124317 0.66 0.988914
Target:  5'- cGGAgACGUucgagcgccaccuccGCGGGuugcuGCGGGGCGuccGGCGa -3'
miRNA:   3'- uCCUgUGCA---------------UGCCU-----UGCUCUGU---UCGC- -5'
31258 3' -52 NC_006560.1 + 34651 0.66 0.988337
Target:  5'- gGGGACGCGcgGCGGccgGGCGGGuc--GCGg -3'
miRNA:   3'- -UCCUGUGCa-UGCC---UUGCUCuguuCGC- -5'
31258 3' -52 NC_006560.1 + 148769 0.66 0.988337
Target:  5'- cGGGCGCcauguUGGAG-GGGGCGGGCGg -3'
miRNA:   3'- uCCUGUGcau--GCCUUgCUCUGUUCGC- -5'
31258 3' -52 NC_006560.1 + 101306 0.66 0.988337
Target:  5'- gAGGACAUGUccacgacgcgccGCGcGGGCGcGACGGcGCGu -3'
miRNA:   3'- -UCCUGUGCA------------UGC-CUUGCuCUGUU-CGC- -5'
31258 3' -52 NC_006560.1 + 77389 0.66 0.988337
Target:  5'- cGGGGCGCugcugaUGCGGccCGAGGCGGcGCGc -3'
miRNA:   3'- -UCCUGUGc-----AUGCCuuGCUCUGUU-CGC- -5'
31258 3' -52 NC_006560.1 + 103120 0.66 0.986791
Target:  5'- cGGACGCGgggGCGGcGCGccccCGGGCGc -3'
miRNA:   3'- uCCUGUGCa--UGCCuUGCucu-GUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.