miRNA display CGI


Results 1 - 20 of 142 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31258 5' -60.6 NC_006560.1 + 22222 0.66 0.706369
Target:  5'- -cCGcg-GCCCCgGCCcgggcCCCGCGCCGc -3'
miRNA:   3'- caGCuaaCGGGG-UGGu----GGGCGCGGUa -5'
31258 5' -60.6 NC_006560.1 + 83460 0.66 0.706369
Target:  5'- -gCGAgaGCUgCugCACgCGCGCCGUg -3'
miRNA:   3'- caGCUaaCGGgGugGUGgGCGCGGUA- -5'
31258 5' -60.6 NC_006560.1 + 99454 0.66 0.706369
Target:  5'- uUCGuucGCCCCgGgCGCCgGCGCCGg -3'
miRNA:   3'- cAGCuaaCGGGG-UgGUGGgCGCGGUa -5'
31258 5' -60.6 NC_006560.1 + 134223 0.66 0.706369
Target:  5'- gGUCG---GCCCCGCC-CgCCGCGCgGc -3'
miRNA:   3'- -CAGCuaaCGGGGUGGuG-GGCGCGgUa -5'
31258 5' -60.6 NC_006560.1 + 25325 0.66 0.706369
Target:  5'- -gCGcgUGCgcugggCCGCCGgCCGCGCCGa -3'
miRNA:   3'- caGCuaACGg-----GGUGGUgGGCGCGGUa -5'
31258 5' -60.6 NC_006560.1 + 118799 0.66 0.706369
Target:  5'- --gGAggcGCCCCugCGCCaCGCGCgGc -3'
miRNA:   3'- cagCUaa-CGGGGugGUGG-GCGCGgUa -5'
31258 5' -60.6 NC_006560.1 + 118700 0.66 0.706369
Target:  5'- -cCGAg-GCCCUggugGCgGCCUGCGCCGa -3'
miRNA:   3'- caGCUaaCGGGG----UGgUGGGCGCGGUa -5'
31258 5' -60.6 NC_006560.1 + 117728 0.66 0.706369
Target:  5'- -cCGGggcgGCCCgGCCuccuCCCGCGCgAg -3'
miRNA:   3'- caGCUaa--CGGGgUGGu---GGGCGCGgUa -5'
31258 5' -60.6 NC_006560.1 + 148638 0.66 0.705386
Target:  5'- -aCGGgcggGCCCCGCCggccggagacgcgGCCCaaauacgggGCGCCGUg -3'
miRNA:   3'- caGCUaa--CGGGGUGG-------------UGGG---------CGCGGUA- -5'
31258 5' -60.6 NC_006560.1 + 123717 0.66 0.69651
Target:  5'- -aCGca-GCCCCGCCcUCCaGCGCCAc -3'
miRNA:   3'- caGCuaaCGGGGUGGuGGG-CGCGGUa -5'
31258 5' -60.6 NC_006560.1 + 25297 0.66 0.69651
Target:  5'- -cCGGgcccccgGaCCCCGCCG-CCGCGCCGc -3'
miRNA:   3'- caGCUaa-----C-GGGGUGGUgGGCGCGGUa -5'
31258 5' -60.6 NC_006560.1 + 119463 0.66 0.69651
Target:  5'- cUCGGggaCCCCGCguCCCGCGCg-- -3'
miRNA:   3'- cAGCUaacGGGGUGguGGGCGCGgua -5'
31258 5' -60.6 NC_006560.1 + 140297 0.66 0.69651
Target:  5'- aUCGuccaGUCCCagcGCCGgCCGCGCCGg -3'
miRNA:   3'- cAGCuaa-CGGGG---UGGUgGGCGCGGUa -5'
31258 5' -60.6 NC_006560.1 + 142795 0.66 0.69651
Target:  5'- cGUCccccccCCCCACacccugaccggCGCCCGCGCCGUg -3'
miRNA:   3'- -CAGcuaac-GGGGUG-----------GUGGGCGCGGUA- -5'
31258 5' -60.6 NC_006560.1 + 48168 0.66 0.69651
Target:  5'- --aGAUuaUGCCgCCGCCGCCCGuCcCCAUc -3'
miRNA:   3'- cagCUA--ACGG-GGUGGUGGGC-GcGGUA- -5'
31258 5' -60.6 NC_006560.1 + 23898 0.66 0.69651
Target:  5'- -cCGAc-GCCgaCGCCGCCCGCGCgGc -3'
miRNA:   3'- caGCUaaCGGg-GUGGUGGGCGCGgUa -5'
31258 5' -60.6 NC_006560.1 + 16127 0.66 0.69651
Target:  5'- -gCGAgcagggccagGCCgCACCcggaguagACCCGCGCCAc -3'
miRNA:   3'- caGCUaa--------CGGgGUGG--------UGGGCGCGGUa -5'
31258 5' -60.6 NC_006560.1 + 149499 0.66 0.69651
Target:  5'- -cCGAc-GCUCC-CCGCCCGgGCCGc -3'
miRNA:   3'- caGCUaaCGGGGuGGUGGGCgCGGUa -5'
31258 5' -60.6 NC_006560.1 + 23736 0.66 0.69651
Target:  5'- -cCGAggccGCCgUCGCCGCCgugCGCGCCGUg -3'
miRNA:   3'- caGCUaa--CGG-GGUGGUGG---GCGCGGUA- -5'
31258 5' -60.6 NC_006560.1 + 25481 0.66 0.69651
Target:  5'- -cUGGUagccgGCgCCGCCGCCCGCGaCCc- -3'
miRNA:   3'- caGCUAa----CGgGGUGGUGGGCGC-GGua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.