miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31259 3' -53.4 NC_006560.1 + 49871 0.66 0.985176
Target:  5'- gCGACACCGACcggcaGA-UCCuagGUCCg -3'
miRNA:   3'- gGCUGUGGCUGaag--CUcAGGca-CAGG- -5'
31259 3' -53.4 NC_006560.1 + 131049 0.66 0.985176
Target:  5'- gCCGACGCUGAaggucccggCGGGcgccgccgCCGUGcCCg -3'
miRNA:   3'- -GGCUGUGGCUgaa------GCUCa-------GGCACaGG- -5'
31259 3' -53.4 NC_006560.1 + 48113 0.66 0.985176
Target:  5'- cCCGACGCCgcGACggcccCGAGgCCGUacgCCa -3'
miRNA:   3'- -GGCUGUGG--CUGaa---GCUCaGGCAca-GG- -5'
31259 3' -53.4 NC_006560.1 + 23891 0.66 0.985176
Target:  5'- gCCGACGCCGACgcCGAcgCCGc--CCg -3'
miRNA:   3'- -GGCUGUGGCUGaaGCUcaGGCacaGG- -5'
31259 3' -53.4 NC_006560.1 + 19425 0.66 0.985176
Target:  5'- gCGGCGCuCGGCU--GAGcUgGUGUCCg -3'
miRNA:   3'- gGCUGUG-GCUGAagCUCaGgCACAGG- -5'
31259 3' -53.4 NC_006560.1 + 86212 0.66 0.985176
Target:  5'- -gGACAgcaCGAagaUgGAGUCCGUGUCg -3'
miRNA:   3'- ggCUGUg--GCUga-AgCUCAGGCACAGg -5'
31259 3' -53.4 NC_006560.1 + 132591 0.66 0.985176
Target:  5'- uCCGACGCCcaccaGGCcgCGAGgCCGgcgcggaaGUCCu -3'
miRNA:   3'- -GGCUGUGG-----CUGaaGCUCaGGCa-------CAGG- -5'
31259 3' -53.4 NC_006560.1 + 35272 0.66 0.983378
Target:  5'- gCCGccGCGCCgGGCggCGGGgcCCGggGUCCg -3'
miRNA:   3'- -GGC--UGUGG-CUGaaGCUCa-GGCa-CAGG- -5'
31259 3' -53.4 NC_006560.1 + 27424 0.66 0.983378
Target:  5'- gCgGGCcuCCGGCguuUCGcGUCCGcGUCCu -3'
miRNA:   3'- -GgCUGu-GGCUGa--AGCuCAGGCaCAGG- -5'
31259 3' -53.4 NC_006560.1 + 18618 0.66 0.981421
Target:  5'- gUCGGCGCgCGGCUcgUCGccGUUCGcGUCCc -3'
miRNA:   3'- -GGCUGUG-GCUGA--AGCu-CAGGCaCAGG- -5'
31259 3' -53.4 NC_006560.1 + 32170 0.66 0.981421
Target:  5'- cCCGGCGCCGAgggCGGGUCgagGcCCg -3'
miRNA:   3'- -GGCUGUGGCUgaaGCUCAGgcaCaGG- -5'
31259 3' -53.4 NC_006560.1 + 136947 0.66 0.981421
Target:  5'- gCGGCACCuuccgcucCUUCGAGgCCGUG-CUg -3'
miRNA:   3'- gGCUGUGGcu------GAAGCUCaGGCACaGG- -5'
31259 3' -53.4 NC_006560.1 + 70803 0.66 0.981421
Target:  5'- gCCGGCAgcacgcCCGACcagCGcgccgcggcGGUCCGggagGUCCu -3'
miRNA:   3'- -GGCUGU------GGCUGaa-GC---------UCAGGCa---CAGG- -5'
31259 3' -53.4 NC_006560.1 + 12905 0.66 0.979295
Target:  5'- gUCGGCGCC---UUCGGG-CCGUG-CCa -3'
miRNA:   3'- -GGCUGUGGcugAAGCUCaGGCACaGG- -5'
31259 3' -53.4 NC_006560.1 + 46611 0.66 0.979295
Target:  5'- cCCGGC-CCGACggcgccuugucUCGGGg-CGUGUCUu -3'
miRNA:   3'- -GGCUGuGGCUGa----------AGCUCagGCACAGG- -5'
31259 3' -53.4 NC_006560.1 + 17522 0.66 0.979295
Target:  5'- gCGGCGCCGcCgucgUCGucGUCCGcccccucGUCCg -3'
miRNA:   3'- gGCUGUGGCuGa---AGCu-CAGGCa------CAGG- -5'
31259 3' -53.4 NC_006560.1 + 39801 0.66 0.979295
Target:  5'- -gGAgGCCGGCc-CGGGcUCCGcGUCCu -3'
miRNA:   3'- ggCUgUGGCUGaaGCUC-AGGCaCAGG- -5'
31259 3' -53.4 NC_006560.1 + 49184 0.66 0.976994
Target:  5'- aCGACGCCGACUaCGAccCCGacgCCc -3'
miRNA:   3'- gGCUGUGGCUGAaGCUcaGGCacaGG- -5'
31259 3' -53.4 NC_006560.1 + 72440 0.66 0.976994
Target:  5'- aCGAUACCGACggCGAGgaCGgggCCa -3'
miRNA:   3'- gGCUGUGGCUGaaGCUCagGCacaGG- -5'
31259 3' -53.4 NC_006560.1 + 36129 0.66 0.976994
Target:  5'- gCCGcCGCCGGggUCGAG-CCGgGcCCg -3'
miRNA:   3'- -GGCuGUGGCUgaAGCUCaGGCaCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.