Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3126 | 3' | -57.2 | NC_001493.1 | + | 2886 | 0.67 | 0.773765 |
Target: 5'- gCCAGagugggcagaguCUUCGagaaGAGGGUGGCGGCg -3' miRNA: 3'- gGGUC------------GAGGCguagCUCUCACCGUCG- -5' |
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3126 | 3' | -57.2 | NC_001493.1 | + | 5680 | 1.1 | 0.001753 |
Target: 5'- aCCAGCUCCGCAUCGAGAGUGGCAGCu -3' miRNA: 3'- gGGUCGAGGCGUAGCUCUCACCGUCG- -5' |
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3126 | 3' | -57.2 | NC_001493.1 | + | 5793 | 1.1 | 0.001753 |
Target: 5'- aCCCAGCUCCGCAUCGAGAGUGGUAGCu -3' miRNA: 3'- -GGGUCGAGGCGUAGCUCUCACCGUCG- -5' |
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3126 | 3' | -57.2 | NC_001493.1 | + | 5878 | 1.13 | 0.001007 |
Target: 5'- aCCCAGCUCCGCAUCGAGAGUGGCAGCu -3' miRNA: 3'- -GGGUCGAGGCGUAGCUCUCACCGUCG- -5' |
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3126 | 3' | -57.2 | NC_001493.1 | + | 8263 | 0.74 | 0.40421 |
Target: 5'- aCCCGcGCUCCaGCAcCGAuGGGUGGgAGCc -3' miRNA: 3'- -GGGU-CGAGG-CGUaGCU-CUCACCgUCG- -5' |
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3126 | 3' | -57.2 | NC_001493.1 | + | 9131 | 0.66 | 0.818649 |
Target: 5'- uCCCcGCgaCCGCGcuccCGGGGaUGGCGGCg -3' miRNA: 3'- -GGGuCGa-GGCGUa---GCUCUcACCGUCG- -5' |
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3126 | 3' | -57.2 | NC_001493.1 | + | 13494 | 0.66 | 0.851579 |
Target: 5'- aUCGcCUCUGCAUCGGGGGggGGaggaGGCu -3' miRNA: 3'- gGGUcGAGGCGUAGCUCUCa-CCg---UCG- -5' |
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3126 | 3' | -57.2 | NC_001493.1 | + | 14964 | 0.67 | 0.789433 |
Target: 5'- uCCC-GCUCCGCuccuggacgaccucGUCGAGcucGG-GGguGCg -3' miRNA: 3'- -GGGuCGAGGCG--------------UAGCUC---UCaCCguCG- -5' |
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3126 | 3' | -57.2 | NC_001493.1 | + | 15714 | 0.66 | 0.851579 |
Target: 5'- uUCCAGCUCuucucggugagCGCAUCGAGAcccuccggGGCcaccuucgauAGCa -3' miRNA: 3'- -GGGUCGAG-----------GCGUAGCUCUca------CCG----------UCG- -5' |
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3126 | 3' | -57.2 | NC_001493.1 | + | 19514 | 0.67 | 0.792157 |
Target: 5'- aUCAGCUCC-CAcUUGaAGAGgcgcggGGCGGCg -3' miRNA: 3'- gGGUCGAGGcGU-AGC-UCUCa-----CCGUCG- -5' |
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3126 | 3' | -57.2 | NC_001493.1 | + | 19886 | 0.67 | 0.801143 |
Target: 5'- uCCCAGUcCCcCGUCGGGAGUcGCgccGGCc -3' miRNA: 3'- -GGGUCGaGGcGUAGCUCUCAcCG---UCG- -5' |
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3126 | 3' | -57.2 | NC_001493.1 | + | 29697 | 0.72 | 0.495127 |
Target: 5'- cCCCuggAGCUCCGCAacgCGAcucucGAGcUGGCGGUu -3' miRNA: 3'- -GGG---UCGAGGCGUa--GCU-----CUC-ACCGUCG- -5' |
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3126 | 3' | -57.2 | NC_001493.1 | + | 30968 | 0.66 | 0.827153 |
Target: 5'- aCCGGC-CCGUcgacaaacuucGUCG-GGGUGGC-GCu -3' miRNA: 3'- gGGUCGaGGCG-----------UAGCuCUCACCGuCG- -5' |
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3126 | 3' | -57.2 | NC_001493.1 | + | 31912 | 0.67 | 0.773765 |
Target: 5'- aCCCGcGCUCCGUgauggAUCGAGAc--GCGGUg -3' miRNA: 3'- -GGGU-CGAGGCG-----UAGCUCUcacCGUCG- -5' |
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3126 | 3' | -57.2 | NC_001493.1 | + | 36165 | 0.66 | 0.842819 |
Target: 5'- --gGGCUCCuguggagcgaggGguUCGGGAacgggcuGUGGCAGCg -3' miRNA: 3'- gggUCGAGG------------CguAGCUCU-------CACCGUCG- -5' |
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3126 | 3' | -57.2 | NC_001493.1 | + | 43752 | 0.66 | 0.818649 |
Target: 5'- cCCCGauGaCUCCGCGauggccguUCGuuGGUGGUAGUu -3' miRNA: 3'- -GGGU--C-GAGGCGU--------AGCucUCACCGUCG- -5' |
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3126 | 3' | -57.2 | NC_001493.1 | + | 51031 | 0.66 | 0.827153 |
Target: 5'- cCCaCAGCU-CGCucaaGGuGGUGGCAGCu -3' miRNA: 3'- -GG-GUCGAgGCGuag-CUcUCACCGUCG- -5' |
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3126 | 3' | -57.2 | NC_001493.1 | + | 55085 | 0.68 | 0.754869 |
Target: 5'- gCgAGCUCCGggcuggucggcuCAUcCGAGAacugugaugGUGGCGGCg -3' miRNA: 3'- gGgUCGAGGC------------GUA-GCUCU---------CACCGUCG- -5' |
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3126 | 3' | -57.2 | NC_001493.1 | + | 56719 | 0.67 | 0.783028 |
Target: 5'- gUCCAGCgcggcacucgUCGCGUCGAc---GGCAGCa -3' miRNA: 3'- -GGGUCGa---------GGCGUAGCUcucaCCGUCG- -5' |
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3126 | 3' | -57.2 | NC_001493.1 | + | 57785 | 0.72 | 0.504742 |
Target: 5'- aCCCGGUUCaGUAUCGAGGG-GGCGu- -3' miRNA: 3'- -GGGUCGAGgCGUAGCUCUCaCCGUcg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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