miRNA display CGI


Results 1 - 20 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31260 3' -61.9 NC_006560.1 + 23638 0.66 0.666706
Target:  5'- cGCGCCGCGcCCGCgCGCcuggCUgcgCGAg -3'
miRNA:   3'- uUGCGGCGCuGGCGgGCGa---GAga-GCU- -5'
31260 3' -61.9 NC_006560.1 + 24827 0.66 0.666706
Target:  5'- uGCGCCGCG-CCguGCUCGC-CUC-CGGc -3'
miRNA:   3'- uUGCGGCGCuGG--CGGGCGaGAGaGCU- -5'
31260 3' -61.9 NC_006560.1 + 22978 0.66 0.666706
Target:  5'- cGACGCCGCGcgccaguacGCCcucaucacgcGCCUGCUCUa-CGAc -3'
miRNA:   3'- -UUGCGGCGC---------UGG----------CGGGCGAGAgaGCU- -5'
31260 3' -61.9 NC_006560.1 + 27485 0.66 0.666706
Target:  5'- cACGCCcggcaGCGuCCGCgCGCUCgccacccucacUCUCGGc -3'
miRNA:   3'- uUGCGG-----CGCuGGCGgGCGAG-----------AGAGCU- -5'
31260 3' -61.9 NC_006560.1 + 70824 0.66 0.656874
Target:  5'- cGCGCCGCGGCgGUCCGggaggUC-CUCGc -3'
miRNA:   3'- uUGCGGCGCUGgCGGGCg----AGaGAGCu -5'
31260 3' -61.9 NC_006560.1 + 123986 0.66 0.656874
Target:  5'- gAACcCCGCGAccCCGCCCGgC-CUC-CGAa -3'
miRNA:   3'- -UUGcGGCGCU--GGCGGGC-GaGAGaGCU- -5'
31260 3' -61.9 NC_006560.1 + 51797 0.66 0.656874
Target:  5'- gGGCGCCGgGACCGuggcCCCGCgguucCUgCUgGAg -3'
miRNA:   3'- -UUGCGGCgCUGGC----GGGCGa----GA-GAgCU- -5'
31260 3' -61.9 NC_006560.1 + 131504 0.66 0.656874
Target:  5'- -uCGUCGCGGCCGUcgggCUGCgg-CUCGAg -3'
miRNA:   3'- uuGCGGCGCUGGCG----GGCGagaGAGCU- -5'
31260 3' -61.9 NC_006560.1 + 22305 0.66 0.656874
Target:  5'- cACGCCgGCGACgaGCUCGCggagCUCgCGGa -3'
miRNA:   3'- uUGCGG-CGCUGg-CGGGCGa---GAGaGCU- -5'
31260 3' -61.9 NC_006560.1 + 78156 0.66 0.656874
Target:  5'- gAGCGCCGCGcUCG-CCGCUCUgUgGu -3'
miRNA:   3'- -UUGCGGCGCuGGCgGGCGAGAgAgCu -5'
31260 3' -61.9 NC_006560.1 + 82204 0.66 0.656874
Target:  5'- -cCGCCGCGaACCGacCCCGCUuCUgcgCGAg -3'
miRNA:   3'- uuGCGGCGC-UGGC--GGGCGA-GAga-GCU- -5'
31260 3' -61.9 NC_006560.1 + 5040 0.66 0.656874
Target:  5'- -cCGCCGCGAgcuCCGCgagcuCCGCgagCUCcgCGAg -3'
miRNA:   3'- uuGCGGCGCU---GGCG-----GGCGa--GAGa-GCU- -5'
31260 3' -61.9 NC_006560.1 + 117922 0.66 0.654905
Target:  5'- uACGCCGcCGACgGCCCGCgccuggcgCGGc -3'
miRNA:   3'- uUGCGGC-GCUGgCGGGCGagaga---GCU- -5'
31260 3' -61.9 NC_006560.1 + 88172 0.66 0.647024
Target:  5'- gAGgGCCGCGGCCaUCCGCUCgca-GAg -3'
miRNA:   3'- -UUgCGGCGCUGGcGGGCGAGagagCU- -5'
31260 3' -61.9 NC_006560.1 + 142554 0.66 0.647024
Target:  5'- gGGCGCgucggaCGCgGGCCGCCgGCcUCUCcCGAg -3'
miRNA:   3'- -UUGCG------GCG-CUGGCGGgCG-AGAGaGCU- -5'
31260 3' -61.9 NC_006560.1 + 133362 0.66 0.647024
Target:  5'- cGCGgucccCCGCGACCGCCUGC-CUaagggCGGc -3'
miRNA:   3'- uUGC-----GGCGCUGGCGGGCGaGAga---GCU- -5'
31260 3' -61.9 NC_006560.1 + 33643 0.66 0.647024
Target:  5'- gGGCGCCggggGCGGCCGCgggCCGCUUaggCGAg -3'
miRNA:   3'- -UUGCGG----CGCUGGCG---GGCGAGagaGCU- -5'
31260 3' -61.9 NC_006560.1 + 87796 0.66 0.647024
Target:  5'- -uCGCCGCG-CC-CCCGCUCgacggucaggUUUCGGc -3'
miRNA:   3'- uuGCGGCGCuGGcGGGCGAG----------AGAGCU- -5'
31260 3' -61.9 NC_006560.1 + 71256 0.66 0.647024
Target:  5'- --aGCCGCG-CCGCgCGCggcCUC-CGAa -3'
miRNA:   3'- uugCGGCGCuGGCGgGCGa--GAGaGCU- -5'
31260 3' -61.9 NC_006560.1 + 118064 0.66 0.646038
Target:  5'- -cCGCCGCGGgCGCCCccgccgaGCUCgcggCgggCGAc -3'
miRNA:   3'- uuGCGGCGCUgGCGGG-------CGAGa---Ga--GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.