miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31260 5' -54.9 NC_006560.1 + 34494 0.66 0.953113
Target:  5'- aGCCGGGGGuCGCGGCuccGGaGGCCggcacgGGg -3'
miRNA:   3'- cUGGCUCUUuGUGCCG---CC-CUGGaa----CC- -5'
31260 5' -54.9 NC_006560.1 + 147279 0.66 0.953113
Target:  5'- cGGCCGGGGccGgGCGG-GGGGCUcUGGc -3'
miRNA:   3'- -CUGGCUCUu-UgUGCCgCCCUGGaACC- -5'
31260 5' -54.9 NC_006560.1 + 142731 0.66 0.953113
Target:  5'- -cCCGGGggGCcCGGCGGaGCCc-GGc -3'
miRNA:   3'- cuGGCUCuuUGuGCCGCCcUGGaaCC- -5'
31260 5' -54.9 NC_006560.1 + 98305 0.66 0.953113
Target:  5'- uGGCCGuGggGCugcugguccUGGCGGGGCUggcGGc -3'
miRNA:   3'- -CUGGCuCuuUGu--------GCCGCCCUGGaa-CC- -5'
31260 5' -54.9 NC_006560.1 + 145057 0.66 0.953113
Target:  5'- cGCCGGGcgGccuccucccCugGGCGGGGCCg-GGc -3'
miRNA:   3'- cUGGCUCuuU---------GugCCGCCCUGGaaCC- -5'
31260 5' -54.9 NC_006560.1 + 26349 0.66 0.953113
Target:  5'- -cCCGGGAgggcgGAgACGGCGGGGCg---- -3'
miRNA:   3'- cuGGCUCU-----UUgUGCCGCCCUGgaacc -5'
31260 5' -54.9 NC_006560.1 + 47165 0.66 0.953113
Target:  5'- cGCCGAgcucgcGAGGCGCGaGgGGGGCCg--- -3'
miRNA:   3'- cUGGCU------CUUUGUGC-CgCCCUGGaacc -5'
31260 5' -54.9 NC_006560.1 + 34647 0.66 0.953113
Target:  5'- cACCGGGGAcGCGCGGCGG--CCgggcGGg -3'
miRNA:   3'- cUGGCUCUU-UGUGCCGCCcuGGaa--CC- -5'
31260 5' -54.9 NC_006560.1 + 45244 0.66 0.953113
Target:  5'- gGGCCGGGGgggcgucuguGGCGCGuGCGGGGgaggugccCCggGGg -3'
miRNA:   3'- -CUGGCUCU----------UUGUGC-CGCCCU--------GGaaCC- -5'
31260 5' -54.9 NC_006560.1 + 3324 0.66 0.953113
Target:  5'- gGGCCG-GggGCGCgGGCGGGcgGCgUcGGc -3'
miRNA:   3'- -CUGGCuCuuUGUG-CCGCCC--UGgAaCC- -5'
31260 5' -54.9 NC_006560.1 + 26620 0.66 0.953113
Target:  5'- cGCCGcgGGggGgGgGGaCGGGGCCgcgGGg -3'
miRNA:   3'- cUGGC--UCuuUgUgCC-GCCCUGGaa-CC- -5'
31260 5' -54.9 NC_006560.1 + 68448 0.66 0.953113
Target:  5'- cGGCCGcccuGggGC-CGGCGcGGACCc--- -3'
miRNA:   3'- -CUGGCu---CuuUGuGCCGC-CCUGGaacc -5'
31260 5' -54.9 NC_006560.1 + 89305 0.66 0.949018
Target:  5'- cGGCCGuu---CcCGGCGGGACCUc-- -3'
miRNA:   3'- -CUGGCucuuuGuGCCGCCCUGGAacc -5'
31260 5' -54.9 NC_006560.1 + 87068 0.66 0.949018
Target:  5'- cGGCCGAG-AGCucgaGGUGGGGCa--GGa -3'
miRNA:   3'- -CUGGCUCuUUGug--CCGCCCUGgaaCC- -5'
31260 5' -54.9 NC_006560.1 + 99235 0.66 0.949018
Target:  5'- cGGCCcGGAAACGaGG-GGGGCgUUGGc -3'
miRNA:   3'- -CUGGcUCUUUGUgCCgCCCUGgAACC- -5'
31260 5' -54.9 NC_006560.1 + 45974 0.66 0.949018
Target:  5'- aGACCGAGcgccACGCGGUaGGGcGCCccGGc -3'
miRNA:   3'- -CUGGCUCuu--UGUGCCG-CCC-UGGaaCC- -5'
31260 5' -54.9 NC_006560.1 + 122550 0.66 0.949018
Target:  5'- gGGCCGGGuucuCGCGGUGGcGACUgagccGGu -3'
miRNA:   3'- -CUGGCUCuuu-GUGCCGCC-CUGGaa---CC- -5'
31260 5' -54.9 NC_006560.1 + 2153 0.66 0.949018
Target:  5'- cGCgCGcAGAAggcgcgcaGCGCGGCGGGcaggGCCUcGGg -3'
miRNA:   3'- cUG-GC-UCUU--------UGUGCCGCCC----UGGAaCC- -5'
31260 5' -54.9 NC_006560.1 + 114354 0.66 0.949018
Target:  5'- cGGCCG-GggGCGCGuacGCGGGcgACCgcgaGGg -3'
miRNA:   3'- -CUGGCuCuuUGUGC---CGCCC--UGGaa--CC- -5'
31260 5' -54.9 NC_006560.1 + 74332 0.66 0.948596
Target:  5'- cGCCGGcggccuggcucccGAGACGCGGCGccuGGCCgaGGa -3'
miRNA:   3'- cUGGCU-------------CUUUGUGCCGCc--CUGGaaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.