miRNA display CGI


Results 21 - 40 of 715 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31261 3' -67 NC_006560.1 + 79707 0.66 0.473515
Target:  5'- cCGCCcccCGCC-GCCCCCGuucaggccccCGCCGCc -3'
miRNA:   3'- cGCGGccaGCGGcCGGGGGU----------GCGGCG- -5'
31261 3' -67 NC_006560.1 + 126251 0.66 0.472651
Target:  5'- gGCGuacgugaccuccuCCGcGUCGCUGGCCaCCU-CGUCGUa -3'
miRNA:   3'- -CGC-------------GGC-CAGCGGCCGG-GGGuGCGGCG- -5'
31261 3' -67 NC_006560.1 + 29054 0.66 0.472651
Target:  5'- uGgGCCGcGUCuCCGGCCggcggggCCCGC-CCGUc -3'
miRNA:   3'- -CgCGGC-CAGcGGCCGG-------GGGUGcGGCG- -5'
31261 3' -67 NC_006560.1 + 11758 0.66 0.472651
Target:  5'- cGCGuCCGGgucgcaucgcgcgUCGaCCGGCgUCU-CGCCGCc -3'
miRNA:   3'- -CGC-GGCC-------------AGC-GGCCGgGGGuGCGGCG- -5'
31261 3' -67 NC_006560.1 + 20090 0.66 0.470926
Target:  5'- cGUGCCGGgacuagacCGgguuccccuggacuCCGGaaaaacgaCCCCCGCGCgGCg -3'
miRNA:   3'- -CGCGGCCa-------GC--------------GGCC--------GGGGGUGCGgCG- -5'
31261 3' -67 NC_006560.1 + 66206 0.66 0.470926
Target:  5'- gGCGCUGGcgguaggugaaCGCCagguagagaaacgcGGCCCCCggGCGCCcgaaGCa -3'
miRNA:   3'- -CGCGGCCa----------GCGG--------------CCGGGGG--UGCGG----CG- -5'
31261 3' -67 NC_006560.1 + 66641 0.66 0.467484
Target:  5'- cGCGacaggacCCuGUCGUCGaggccucgagcacccGCCCCCACGCCu- -3'
miRNA:   3'- -CGC-------GGcCAGCGGC---------------CGGGGGUGCGGcg -5'
31261 3' -67 NC_006560.1 + 39330 0.66 0.464911
Target:  5'- gGgGCgGGgcCGCCcGCCCUCGCGCCn- -3'
miRNA:   3'- -CgCGgCCa-GCGGcCGGGGGUGCGGcg -5'
31261 3' -67 NC_006560.1 + 27421 0.66 0.464911
Target:  5'- cGCGCgGGcCuCCGGCgUUUCGCGuCCGCg -3'
miRNA:   3'- -CGCGgCCaGcGGCCG-GGGGUGC-GGCG- -5'
31261 3' -67 NC_006560.1 + 86250 0.66 0.464911
Target:  5'- uGCGCaUGGa-GUagGGCCCCgGCGCgCGCa -3'
miRNA:   3'- -CGCG-GCCagCGg-CCGGGGgUGCG-GCG- -5'
31261 3' -67 NC_006560.1 + 146578 0.66 0.464911
Target:  5'- -aGCCGGaggCGCCcccGGCgCCCgAgGCCGg -3'
miRNA:   3'- cgCGGCCa--GCGG---CCG-GGGgUgCGGCg -5'
31261 3' -67 NC_006560.1 + 54928 0.66 0.464911
Target:  5'- gGgGCCGGggcggccaUCGUCggGGCUCgCGCGCCGg -3'
miRNA:   3'- -CgCGGCC--------AGCGG--CCGGGgGUGCGGCg -5'
31261 3' -67 NC_006560.1 + 84698 0.66 0.464911
Target:  5'- gGCGCgGGcgacgggCGCCucGGCgCCaCCA-GCCGCg -3'
miRNA:   3'- -CGCGgCCa------GCGG--CCG-GG-GGUgCGGCG- -5'
31261 3' -67 NC_006560.1 + 146852 0.66 0.464911
Target:  5'- gGCGCgGGgcggggcggCGcCCGGCCCa-GCGCCu- -3'
miRNA:   3'- -CGCGgCCa--------GC-GGCCGGGggUGCGGcg -5'
31261 3' -67 NC_006560.1 + 119933 0.66 0.464911
Target:  5'- uGCGCag--CGUgaaccacccccUGGCCCCCGCGCucCGCg -3'
miRNA:   3'- -CGCGgccaGCG-----------GCCGGGGGUGCG--GCG- -5'
31261 3' -67 NC_006560.1 + 45496 0.66 0.464911
Target:  5'- aGCGUCccaGGaCGUaguaGGCCUCCGCGCCc- -3'
miRNA:   3'- -CGCGG---CCaGCGg---CCGGGGGUGCGGcg -5'
31261 3' -67 NC_006560.1 + 129606 0.66 0.464911
Target:  5'- cGCGUgaCGGaCGCCcuaagcGGCCgCCC-CGCCGg -3'
miRNA:   3'- -CGCG--GCCaGCGG------CCGG-GGGuGCGGCg -5'
31261 3' -67 NC_006560.1 + 14316 0.66 0.464911
Target:  5'- -gGuuGGUCaccaGCgCGGCCgCCCagGCGCCGa -3'
miRNA:   3'- cgCggCCAG----CG-GCCGG-GGG--UGCGGCg -5'
31261 3' -67 NC_006560.1 + 44053 0.66 0.464911
Target:  5'- aGgGCCGGUagagCGCCaGGCUCCgcucguagCGCGCCu- -3'
miRNA:   3'- -CgCGGCCA----GCGG-CCGGGG--------GUGCGGcg -5'
31261 3' -67 NC_006560.1 + 75490 0.66 0.464911
Target:  5'- cGCGCCGaGuUCGaCgCGGUCgagCUGCGCCGCc -3'
miRNA:   3'- -CGCGGC-C-AGC-G-GCCGGg--GGUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.