miRNA display CGI


Results 1 - 20 of 754 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31262 3' -61.1 NC_006560.1 + 531 0.67 0.652356
Target:  5'- gCGGCGGcCgGCCGCgccCCGGGucccCGGCGUc -3'
miRNA:   3'- gGCCGCCuGgCGGCG---GGUCU----GUUGCG- -5'
31262 3' -61.1 NC_006560.1 + 669 0.72 0.411897
Target:  5'- cCCGGCGcGcCCGCgGCgCGGGCucguCGCg -3'
miRNA:   3'- -GGCCGC-CuGGCGgCGgGUCUGuu--GCG- -5'
31262 3' -61.1 NC_006560.1 + 982 0.67 0.691057
Target:  5'- cCCGG-GGGCgCGCCccucGCCCcGGCcggGGCGCc -3'
miRNA:   3'- -GGCCgCCUG-GCGG----CGGGuCUG---UUGCG- -5'
31262 3' -61.1 NC_006560.1 + 1069 0.72 0.403684
Target:  5'- gCGGCcgccgacgGGGCagaaGCCGCCCGccaggcuccccGGCGGCGCg -3'
miRNA:   3'- gGCCG--------CCUGg---CGGCGGGU-----------CUGUUGCG- -5'
31262 3' -61.1 NC_006560.1 + 1174 0.66 0.738373
Target:  5'- cUCuGCGGACCGCuCGCaCGGGCAGa-- -3'
miRNA:   3'- -GGcCGCCUGGCG-GCGgGUCUGUUgcg -5'
31262 3' -61.1 NC_006560.1 + 1253 0.67 0.685286
Target:  5'- cCCGGCGGGgcccccgcgaagcccCCGCgaaGCCCccGCcGCGCc -3'
miRNA:   3'- -GGCCGCCU---------------GGCGg--CGGGucUGuUGCG- -5'
31262 3' -61.1 NC_006560.1 + 1356 0.72 0.403684
Target:  5'- gCGcGCGGGucccCCGCgGCCCGcACGGCGCc -3'
miRNA:   3'- gGC-CGCCU----GGCGgCGGGUcUGUUGCG- -5'
31262 3' -61.1 NC_006560.1 + 1505 0.67 0.662072
Target:  5'- gCCGGCGGGagCGCgUGCaUCGGGCcccgGGCGCg -3'
miRNA:   3'- -GGCCGCCUg-GCG-GCG-GGUCUG----UUGCG- -5'
31262 3' -61.1 NC_006560.1 + 1919 0.68 0.636784
Target:  5'- cUCGGCGG-CCGCCGgcucgccguccggguCCCAGucCGgggucGCGCc -3'
miRNA:   3'- -GGCCGCCuGGCGGC---------------GGGUCu-GU-----UGCG- -5'
31262 3' -61.1 NC_006560.1 + 2041 0.78 0.180291
Target:  5'- gUCGGCGcGGCCgGCgGCCCAGcgcacgcGCGGCGCg -3'
miRNA:   3'- -GGCCGC-CUGG-CGgCGGGUC-------UGUUGCG- -5'
31262 3' -61.1 NC_006560.1 + 2078 0.69 0.555511
Target:  5'- gCGGCGGGguCCGgggGCCCGGcguCGGCGCg -3'
miRNA:   3'- gGCCGCCU--GGCgg-CGGGUCu--GUUGCG- -5'
31262 3' -61.1 NC_006560.1 + 2135 0.67 0.662072
Target:  5'- uCCGGCucGGGCagggCGCgCGCgCAGAaGGCGCg -3'
miRNA:   3'- -GGCCG--CCUG----GCG-GCGgGUCUgUUGCG- -5'
31262 3' -61.1 NC_006560.1 + 2194 0.72 0.371889
Target:  5'- cCCGGCGcGcGCgGCCGCgCGGucCAGCGCc -3'
miRNA:   3'- -GGCCGC-C-UGgCGGCGgGUCu-GUUGCG- -5'
31262 3' -61.1 NC_006560.1 + 2311 0.76 0.216828
Target:  5'- gCCGGCGG-CgGCCGCCuCGcgcgcgggcgagucGGCGGCGCg -3'
miRNA:   3'- -GGCCGCCuGgCGGCGG-GU--------------CUGUUGCG- -5'
31262 3' -61.1 NC_006560.1 + 2405 0.68 0.6037
Target:  5'- aCGGCGGugUcgGgC-CCCAGGCGcguGCGCa -3'
miRNA:   3'- gGCCGCCugG--CgGcGGGUCUGU---UGCG- -5'
31262 3' -61.1 NC_006560.1 + 2436 0.7 0.487443
Target:  5'- --cGCGGuagcgcacguugccGCCGCgGCCCAGGCGcggcggcgGCGCg -3'
miRNA:   3'- ggcCGCC--------------UGGCGgCGGGUCUGU--------UGCG- -5'
31262 3' -61.1 NC_006560.1 + 2579 0.66 0.695855
Target:  5'- gCGGCGGGCCagcggacGUCGCacugcgcggcgggCAGcACGGCGCa -3'
miRNA:   3'- gGCCGCCUGG-------CGGCGg------------GUC-UGUUGCG- -5'
31262 3' -61.1 NC_006560.1 + 2662 0.68 0.6037
Target:  5'- gUCGGCGGGCCaCUcCUCGGGCGGCa- -3'
miRNA:   3'- -GGCCGCCUGGcGGcGGGUCUGUUGcg -5'
31262 3' -61.1 NC_006560.1 + 2713 0.81 0.116131
Target:  5'- gCCGGCGGcgGCCGCCagcagGCCCAggaacucGACGGCGCc -3'
miRNA:   3'- -GGCCGCC--UGGCGG-----CGGGU-------CUGUUGCG- -5'
31262 3' -61.1 NC_006560.1 + 2815 0.73 0.341843
Target:  5'- gUCGGgGGGCCcgguccaguuGCCgGCCCAGGCGGcCGUg -3'
miRNA:   3'- -GGCCgCCUGG----------CGG-CGGGUCUGUU-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.