miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31262 5' -54.9 NC_006560.1 + 147983 0.66 0.944851
Target:  5'- cGUGuCGG-CGUCgGAggCGGggCGGUCg -3'
miRNA:   3'- -CAC-GCCaGUAGgCUuaGCCa-GCCAGa -5'
31262 5' -54.9 NC_006560.1 + 8376 0.66 0.935472
Target:  5'- cUGCGG--GUCCGucuGUCGGUCGcUCg -3'
miRNA:   3'- cACGCCagUAGGCu--UAGCCAGCcAGa -5'
31262 5' -54.9 NC_006560.1 + 115910 0.66 0.934482
Target:  5'- -cGCGGUCGUgCG-GUCGGgggaccuggcccCGGUCa -3'
miRNA:   3'- caCGCCAGUAgGCuUAGCCa-----------GCCAGa -5'
31262 5' -54.9 NC_006560.1 + 28031 0.67 0.919611
Target:  5'- cUGCGGUCcuggggUGAGUCGGU-GGUCUu -3'
miRNA:   3'- cACGCCAGuag---GCUUAGCCAgCCAGA- -5'
31262 5' -54.9 NC_006560.1 + 19623 0.67 0.919611
Target:  5'- -gGUGG-CGUCCGAGUC-GUCGGg-- -3'
miRNA:   3'- caCGCCaGUAGGCUUAGcCAGCCaga -5'
31262 5' -54.9 NC_006560.1 + 6520 0.67 0.919611
Target:  5'- -aGCGGUCGUCCcgGGAUCGccUCGGgggCUc -3'
miRNA:   3'- caCGCCAGUAGG--CUUAGCc-AGCCa--GA- -5'
31262 5' -54.9 NC_006560.1 + 5485 0.67 0.913845
Target:  5'- -cGCGGUCGcggCgaGggUCGGcggCGGUCg -3'
miRNA:   3'- caCGCCAGUa--Gg-CuuAGCCa--GCCAGa -5'
31262 5' -54.9 NC_006560.1 + 4777 0.69 0.851599
Target:  5'- -cGgGGUCcggGUCCGAGUCGGggUCGGg-- -3'
miRNA:   3'- caCgCCAG---UAGGCUUAGCC--AGCCaga -5'
31262 5' -54.9 NC_006560.1 + 65070 0.69 0.827065
Target:  5'- -cGCGGgug-CCG-AUgGGUCGGUCUg -3'
miRNA:   3'- caCGCCaguaGGCuUAgCCAGCCAGA- -5'
31262 5' -54.9 NC_006560.1 + 132106 0.7 0.800933
Target:  5'- uGUGCGG-CGggCCGGAcggCgGGUCGGUCg -3'
miRNA:   3'- -CACGCCaGUa-GGCUUa--G-CCAGCCAGa -5'
31262 5' -54.9 NC_006560.1 + 82257 0.7 0.800933
Target:  5'- -gGCGGUCgcGUCUGuccgCGGUCGGUg- -3'
miRNA:   3'- caCGCCAG--UAGGCuua-GCCAGCCAga -5'
31262 5' -54.9 NC_006560.1 + 116234 0.7 0.782732
Target:  5'- cUGCGGgCGUCCGAGUuCGGggcgagGGUCUc -3'
miRNA:   3'- cACGCCaGUAGGCUUA-GCCag----CCAGA- -5'
31262 5' -54.9 NC_006560.1 + 95867 0.7 0.773424
Target:  5'- -gGCGG-CAUCgGcccgCGGUCGGUCg -3'
miRNA:   3'- caCGCCaGUAGgCuua-GCCAGCCAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.