miRNA display CGI


Results 1 - 20 of 295 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31263 3' -66.2 NC_006560.1 + 138214 0.66 0.491353
Target:  5'- cACGaCG-CUCUGUCgCGCgGGGCCgUCg -3'
miRNA:   3'- cUGC-GCuGGGGCAG-GCGgCCCGGgAG- -5'
31263 3' -66.2 NC_006560.1 + 23948 0.66 0.491353
Target:  5'- -cCGCGGCgCCCGcgcCCGCCGcccGCCCg- -3'
miRNA:   3'- cuGCGCUG-GGGCa--GGCGGCc--CGGGag -5'
31263 3' -66.2 NC_006560.1 + 49996 0.66 0.491353
Target:  5'- aGACGCcGCCggaCGUCCa-CGGGCCCg- -3'
miRNA:   3'- -CUGCGcUGGg--GCAGGcgGCCCGGGag -5'
31263 3' -66.2 NC_006560.1 + 6103 0.66 0.491353
Target:  5'- gGGCGCcGCgCCG-CCGCC--GCCCUCa -3'
miRNA:   3'- -CUGCGcUGgGGCaGGCGGccCGGGAG- -5'
31263 3' -66.2 NC_006560.1 + 39764 0.66 0.491353
Target:  5'- -cCGCGuCCCCGcgUCCGCCgagcgacccGGGCUC-Cg -3'
miRNA:   3'- cuGCGCuGGGGC--AGGCGG---------CCCGGGaG- -5'
31263 3' -66.2 NC_006560.1 + 89315 0.66 0.491353
Target:  5'- cGGCGgGACCUCaGaCgGCCGGGgcgcgcggguuCCCUCg -3'
miRNA:   3'- -CUGCgCUGGGG-CaGgCGGCCC-----------GGGAG- -5'
31263 3' -66.2 NC_006560.1 + 77930 0.66 0.482475
Target:  5'- uGCGCGuccuGCCCgCgGUCCcgGCCGGGCCg-- -3'
miRNA:   3'- cUGCGC----UGGG-G-CAGG--CGGCCCGGgag -5'
31263 3' -66.2 NC_006560.1 + 74248 0.66 0.482475
Target:  5'- cGACGCGGCCCUG--CGCCGcGaGCUCg- -3'
miRNA:   3'- -CUGCGCUGGGGCagGCGGC-C-CGGGag -5'
31263 3' -66.2 NC_006560.1 + 24912 0.66 0.482475
Target:  5'- cGACGCG-CCgCCGcCgCGCCuGGGCCg-- -3'
miRNA:   3'- -CUGCGCuGG-GGCaG-GCGG-CCCGGgag -5'
31263 3' -66.2 NC_006560.1 + 77692 0.66 0.482475
Target:  5'- gGGCGCGcucGCCCCGcucgcggagCCGgCGGGCgCC-Cg -3'
miRNA:   3'- -CUGCGC---UGGGGCa--------GGCgGCCCG-GGaG- -5'
31263 3' -66.2 NC_006560.1 + 12194 0.66 0.482475
Target:  5'- ----aGGCgCCGUCCGCCccgacGGGCCC-Cg -3'
miRNA:   3'- cugcgCUGgGGCAGGCGG-----CCCGGGaG- -5'
31263 3' -66.2 NC_006560.1 + 118267 0.66 0.482475
Target:  5'- cGCGCcGCCCCGgCCGuggcguCCGGGCUC-Cg -3'
miRNA:   3'- cUGCGcUGGGGCaGGC------GGCCCGGGaG- -5'
31263 3' -66.2 NC_006560.1 + 53591 0.66 0.482475
Target:  5'- aGCGCG-CCCgGgacgCCgGCCGGGagagcgucgacuCCCUCg -3'
miRNA:   3'- cUGCGCuGGGgCa---GG-CGGCCC------------GGGAG- -5'
31263 3' -66.2 NC_006560.1 + 87142 0.66 0.482475
Target:  5'- -uCGCcgaucACCCCGcgCUGCgCGGGCCCg- -3'
miRNA:   3'- cuGCGc----UGGGGCa-GGCG-GCCCGGGag -5'
31263 3' -66.2 NC_006560.1 + 119549 0.66 0.482475
Target:  5'- cGCGgGACCCCcaUgGCCGGGCgCg- -3'
miRNA:   3'- cUGCgCUGGGGcaGgCGGCCCGgGag -5'
31263 3' -66.2 NC_006560.1 + 111489 0.66 0.482475
Target:  5'- cGACGCGGCCguccguggCCGUCC-CCcGGCUCa- -3'
miRNA:   3'- -CUGCGCUGG--------GGCAGGcGGcCCGGGag -5'
31263 3' -66.2 NC_006560.1 + 143330 0.66 0.482475
Target:  5'- --gGCGACCCCGaggCgGCgGGcGCCCc- -3'
miRNA:   3'- cugCGCUGGGGCa--GgCGgCC-CGGGag -5'
31263 3' -66.2 NC_006560.1 + 29058 0.66 0.482475
Target:  5'- -cCGCGuCUCCGgCCgGCgGGGCCCg- -3'
miRNA:   3'- cuGCGCuGGGGCaGG-CGgCCCGGGag -5'
31263 3' -66.2 NC_006560.1 + 144381 0.66 0.482475
Target:  5'- aGGgGCGGCgUCCGcgggCCGgCGGGCCCc- -3'
miRNA:   3'- -CUgCGCUG-GGGCa---GGCgGCCCGGGag -5'
31263 3' -66.2 NC_006560.1 + 115859 0.66 0.482475
Target:  5'- gGACGCGcugGCCCUGg-CGcCCGuGGCCCg- -3'
miRNA:   3'- -CUGCGC---UGGGGCagGC-GGC-CCGGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.