miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31263 5' -46.7 NC_006560.1 + 60051 0.66 0.999951
Target:  5'- -----cACCGACCG-CGGgGUGGAc- -3'
miRNA:   3'- guuauuUGGCUGGCuGCUgCACUUag -5'
31263 5' -46.7 NC_006560.1 + 33016 0.66 0.999951
Target:  5'- gGGUGGGCgggaaGGCCGGCGAgGggaaggGggUCg -3'
miRNA:   3'- gUUAUUUGg----CUGGCUGCUgCa-----CuuAG- -5'
31263 5' -46.7 NC_006560.1 + 15811 0.66 0.999934
Target:  5'- ----cGACCGcgGCCGAcagccgccCGACGUGgAGUCg -3'
miRNA:   3'- guuauUUGGC--UGGCU--------GCUGCAC-UUAG- -5'
31263 5' -46.7 NC_006560.1 + 150177 0.66 0.999934
Target:  5'- gCGcgAGAgaGACCGACGGCGgccgaGAGUg -3'
miRNA:   3'- -GUuaUUUggCUGGCUGCUGCa----CUUAg -5'
31263 5' -46.7 NC_006560.1 + 77709 0.66 0.999913
Target:  5'- uCGcgGAGCCGGCgGGCGcccggcgcccgcGCGUGAccuUCa -3'
miRNA:   3'- -GUuaUUUGGCUGgCUGC------------UGCACUu--AG- -5'
31263 5' -46.7 NC_006560.1 + 106204 0.67 0.999852
Target:  5'- -------gCGGCUGGCGGCGaGGAUCg -3'
miRNA:   3'- guuauuugGCUGGCUGCUGCaCUUAG- -5'
31263 5' -46.7 NC_006560.1 + 96233 0.67 0.999809
Target:  5'- ---gAGGCCGGCCGcGCGACGcugcgGGAa- -3'
miRNA:   3'- guuaUUUGGCUGGC-UGCUGCa----CUUag -5'
31263 5' -46.7 NC_006560.1 + 63421 0.67 0.999804
Target:  5'- ------uCCGGCCGACGACGcacuccgccagguUGAcgCu -3'
miRNA:   3'- guuauuuGGCUGGCUGCUGC-------------ACUuaG- -5'
31263 5' -46.7 NC_006560.1 + 37995 0.67 0.999755
Target:  5'- aCAGUAcggGGCCG--CGAgGugGUGAAUCu -3'
miRNA:   3'- -GUUAU---UUGGCugGCUgCugCACUUAG- -5'
31263 5' -46.7 NC_006560.1 + 80110 0.67 0.999743
Target:  5'- gGGUGAGCCGACgGGCGccgcuccaaaccCGUGGcUCg -3'
miRNA:   3'- gUUAUUUGGCUGgCUGCu-----------GCACUuAG- -5'
31263 5' -46.7 NC_006560.1 + 56980 0.67 0.999717
Target:  5'- ---aGGGCCGgcccgggggcgaagaACCaGACGAgGUGGAUCg -3'
miRNA:   3'- guuaUUUGGC---------------UGG-CUGCUgCACUUAG- -5'
31263 5' -46.7 NC_006560.1 + 5629 0.67 0.999688
Target:  5'- -uAUAccCCGGCCGGCGACGggcGGcgCc -3'
miRNA:   3'- guUAUuuGGCUGGCUGCUGCa--CUuaG- -5'
31263 5' -46.7 NC_006560.1 + 99081 0.68 0.999383
Target:  5'- ------cCCGGCCGAcgucaacguCGACGUGcGUCg -3'
miRNA:   3'- guuauuuGGCUGGCU---------GCUGCACuUAG- -5'
31263 5' -46.7 NC_006560.1 + 48348 0.68 0.999235
Target:  5'- -----cGCUGcCCGGCGACGUGGu-- -3'
miRNA:   3'- guuauuUGGCuGGCUGCUGCACUuag -5'
31263 5' -46.7 NC_006560.1 + 100912 0.68 0.999058
Target:  5'- ---aAGGCCGACCGGguucuuUGugGUGGcUCg -3'
miRNA:   3'- guuaUUUGGCUGGCU------GCugCACUuAG- -5'
31263 5' -46.7 NC_006560.1 + 133546 0.69 0.998847
Target:  5'- ---gGAGCCGGCgGcgcGCGGCGUGGcggacGUCg -3'
miRNA:   3'- guuaUUUGGCUGgC---UGCUGCACU-----UAG- -5'
31263 5' -46.7 NC_006560.1 + 136747 0.69 0.998597
Target:  5'- ------cCUGACCGugGAgaaGUGGAUCg -3'
miRNA:   3'- guuauuuGGCUGGCugCUg--CACUUAG- -5'
31263 5' -46.7 NC_006560.1 + 49260 0.69 0.998302
Target:  5'- cCGGUcGACCGucCCGcgcACgGACGUGAGUCu -3'
miRNA:   3'- -GUUAuUUGGCu-GGC---UG-CUGCACUUAG- -5'
31263 5' -46.7 NC_006560.1 + 15288 0.69 0.997957
Target:  5'- ---gGAGCCGGCgCGGCGGCGgUGGc-- -3'
miRNA:   3'- guuaUUUGGCUG-GCUGCUGC-ACUuag -5'
31263 5' -46.7 NC_006560.1 + 139792 0.69 0.997957
Target:  5'- ---cGAGCCGACgGACGACGcUGccgacgaagcGAUCc -3'
miRNA:   3'- guuaUUUGGCUGgCUGCUGC-AC----------UUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.