miRNA display CGI


Results 1 - 20 of 465 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31264 3' -65 NC_006560.1 + 71664 0.66 0.556582
Target:  5'- -cGCGGGCCuCGgCCGGCG-GCGcccccccGCGUa -3'
miRNA:   3'- ucCGCCUGG-GCgGGCUGCaCGC-------CGCG- -5'
31264 3' -65 NC_006560.1 + 27159 0.79 0.079405
Target:  5'- cGGGcCGGGCCCuCCCG-CG-GCGGCGCg -3'
miRNA:   3'- -UCC-GCCUGGGcGGGCuGCaCGCCGCG- -5'
31264 3' -65 NC_006560.1 + 142528 0.79 0.081409
Target:  5'- gGGGCgGGGCCCcggGCCCGGCG-GCcgGGCGCg -3'
miRNA:   3'- -UCCG-CCUGGG---CGGGCUGCaCG--CCGCG- -5'
31264 3' -65 NC_006560.1 + 119783 0.78 0.087715
Target:  5'- uGGCGGugccCCCGCCCGACccccgGCGGgCGCu -3'
miRNA:   3'- uCCGCCu---GGGCGGGCUGca---CGCC-GCG- -5'
31264 3' -65 NC_006560.1 + 18867 0.78 0.092174
Target:  5'- uGGGCGGGgccgccgcCCCGCCCGcCGUggGCGGCGg -3'
miRNA:   3'- -UCCGCCU--------GGGCGGGCuGCA--CGCCGCg -5'
31264 3' -65 NC_006560.1 + 119607 0.78 0.094483
Target:  5'- cGGCgGGGCCCGagggcCCCGACG-GCGGCGg -3'
miRNA:   3'- uCCG-CCUGGGC-----GGGCUGCaCGCCGCg -5'
31264 3' -65 NC_006560.1 + 24096 0.78 0.101745
Target:  5'- cGGCGGGCCCGaCCCccgcGGCG-GCuGGCGCc -3'
miRNA:   3'- uCCGCCUGGGC-GGG----CUGCaCG-CCGCG- -5'
31264 3' -65 NC_006560.1 + 93859 0.78 0.101745
Target:  5'- cGGCGGcGCCugCGCCCGGgGcugGCGGCGCa -3'
miRNA:   3'- uCCGCC-UGG--GCGGGCUgCa--CGCCGCG- -5'
31264 3' -65 NC_006560.1 + 94325 0.77 0.10428
Target:  5'- aGGGCGcGACCguCGCCCGGCGgcugGCGGacCGCa -3'
miRNA:   3'- -UCCGC-CUGG--GCGGGCUGCa---CGCC--GCG- -5'
31264 3' -65 NC_006560.1 + 27394 0.79 0.077448
Target:  5'- gGGGcCGGGCCCuCCCG-CG-GCGGCGCg -3'
miRNA:   3'- -UCC-GCCUGGGcGGGCuGCaCGCCGCG- -5'
31264 3' -65 NC_006560.1 + 4750 0.8 0.071851
Target:  5'- cGGCGGcgGCCCGCggCGGCG-GCGGCGCg -3'
miRNA:   3'- uCCGCC--UGGGCGg-GCUGCaCGCCGCG- -5'
31264 3' -65 NC_006560.1 + 83945 0.8 0.070073
Target:  5'- cGGCGGACCCggaggcgcaGCCCGACGacgGCGG-GCg -3'
miRNA:   3'- uCCGCCUGGG---------CGGGCUGCa--CGCCgCG- -5'
31264 3' -65 NC_006560.1 + 78348 0.88 0.01862
Target:  5'- cGGCGG-CCCGCCCGACcccGCGGCGCg -3'
miRNA:   3'- uCCGCCuGGGCGGGCUGca-CGCCGCG- -5'
31264 3' -65 NC_006560.1 + 3247 0.83 0.040174
Target:  5'- uGGGCGGGCCCGggCGGCGcGCGGCGCc -3'
miRNA:   3'- -UCCGCCUGGGCggGCUGCaCGCCGCG- -5'
31264 3' -65 NC_006560.1 + 139345 0.82 0.046795
Target:  5'- cGGCGG-CCCGCgcgggggggCCGuCGUGCGGCGCa -3'
miRNA:   3'- uCCGCCuGGGCG---------GGCuGCACGCCGCG- -5'
31264 3' -65 NC_006560.1 + 21014 0.82 0.047997
Target:  5'- cGGCGGGCCCGCCCcgaagGGCGggccgggGCGGgGCg -3'
miRNA:   3'- uCCGCCUGGGCGGG-----CUGCa------CGCCgCG- -5'
31264 3' -65 NC_006560.1 + 141567 0.82 0.049105
Target:  5'- cGGCGGGCCCGgcucgacCCCGGCG-GCGGCGg -3'
miRNA:   3'- uCCGCCUGGGC-------GGGCUGCaCGCCGCg -5'
31264 3' -65 NC_006560.1 + 51512 0.81 0.057299
Target:  5'- cGGCGcGACCCGCgCGGCG-GCGcGCGCg -3'
miRNA:   3'- uCCGC-CUGGGCGgGCUGCaCGC-CGCG- -5'
31264 3' -65 NC_006560.1 + 8661 0.8 0.063376
Target:  5'- cGGCGG-CCCGCguucgCCGGCG-GCGGCGCc -3'
miRNA:   3'- uCCGCCuGGGCG-----GGCUGCaCGCCGCG- -5'
31264 3' -65 NC_006560.1 + 3285 0.8 0.070073
Target:  5'- gGGGuCGGGCCCGCCgGGCGggcggGCGGUGa -3'
miRNA:   3'- -UCC-GCCUGGGCGGgCUGCa----CGCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.