miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31264 5' -55.4 NC_006560.1 + 72639 0.66 0.923548
Target:  5'- -cGCgAGcCCGUUCGcgCGAGGGCCgGg- -3'
miRNA:   3'- caCG-UC-GGCAAGCa-GCUCUUGGgCaa -5'
31264 5' -55.4 NC_006560.1 + 120521 0.66 0.922994
Target:  5'- -gGCAGCgGggCGcCGAGAggauccgGCCCGa- -3'
miRNA:   3'- caCGUCGgCaaGCaGCUCU-------UGGGCaa -5'
31264 5' -55.4 NC_006560.1 + 125259 0.66 0.917894
Target:  5'- cGUGCuGCUGUUCG--GAGAcCCCGa- -3'
miRNA:   3'- -CACGuCGGCAAGCagCUCUuGGGCaa -5'
31264 5' -55.4 NC_006560.1 + 24682 0.66 0.911996
Target:  5'- -gGCcGCCGccucgUCGUCGuGGACgCCGUg -3'
miRNA:   3'- caCGuCGGCa----AGCAGCuCUUG-GGCAa -5'
31264 5' -55.4 NC_006560.1 + 58561 0.66 0.911996
Target:  5'- -aGUuGCCG-UCGUCGAGGgcuguggagaacGCCCGg- -3'
miRNA:   3'- caCGuCGGCaAGCAGCUCU------------UGGGCaa -5'
31264 5' -55.4 NC_006560.1 + 99967 0.66 0.910179
Target:  5'- gGUGC-GCCGUcgcucgCGUCGGGGccuggguccgucgcGCCCGg- -3'
miRNA:   3'- -CACGuCGGCAa-----GCAGCUCU--------------UGGGCaa -5'
31264 5' -55.4 NC_006560.1 + 53638 0.66 0.905856
Target:  5'- cUGCGGCgGcUCGUUGccggggccgcccGGGACCCGUc -3'
miRNA:   3'- cACGUCGgCaAGCAGC------------UCUUGGGCAa -5'
31264 5' -55.4 NC_006560.1 + 114009 0.66 0.905856
Target:  5'- -cGCAGCCGcgCGgaaaCGuGGACCUGg- -3'
miRNA:   3'- caCGUCGGCaaGCa---GCuCUUGGGCaa -5'
31264 5' -55.4 NC_006560.1 + 104924 0.66 0.905856
Target:  5'- -gGgAGCCGcUCGUCGGGcucCCCGg- -3'
miRNA:   3'- caCgUCGGCaAGCAGCUCuu-GGGCaa -5'
31264 5' -55.4 NC_006560.1 + 43151 0.66 0.899475
Target:  5'- -cGCgAGUCGUcacggCGUCGAGGuGCCCGg- -3'
miRNA:   3'- caCG-UCGGCAa----GCAGCUCU-UGGGCaa -5'
31264 5' -55.4 NC_006560.1 + 87391 0.66 0.899475
Target:  5'- aUGCGGCCGUagcCGUCGAGcGGCaCCu-- -3'
miRNA:   3'- cACGUCGGCAa--GCAGCUC-UUG-GGcaa -5'
31264 5' -55.4 NC_006560.1 + 9119 0.67 0.886006
Target:  5'- -cGCGGCaCGUcaUUG-CGAGGGCCCGc- -3'
miRNA:   3'- caCGUCG-GCA--AGCaGCUCUUGGGCaa -5'
31264 5' -55.4 NC_006560.1 + 93581 0.67 0.886006
Target:  5'- -gGCGGCUG-UCGuUCGAGAgggcggccggGCCCGg- -3'
miRNA:   3'- caCGUCGGCaAGC-AGCUCU----------UGGGCaa -5'
31264 5' -55.4 NC_006560.1 + 118206 0.67 0.878925
Target:  5'- gGUGCAGCgGgcCGUgCGGGAcgugGCCCGc- -3'
miRNA:   3'- -CACGUCGgCaaGCA-GCUCU----UGGGCaa -5'
31264 5' -55.4 NC_006560.1 + 53770 0.67 0.874568
Target:  5'- -gGCGGCCcgUCGgucgcggcgcccccCGAGGACCCGUa -3'
miRNA:   3'- caCGUCGGcaAGCa-------------GCUCUUGGGCAa -5'
31264 5' -55.4 NC_006560.1 + 133947 0.67 0.864094
Target:  5'- -cGUAGUCGgcccgggggUCGUCGGGGGCCgCGg- -3'
miRNA:   3'- caCGUCGGCa--------AGCAGCUCUUGG-GCaa -5'
31264 5' -55.4 NC_006560.1 + 78078 0.67 0.864094
Target:  5'- -cGCGGCCGcggCGcUCGGGGGCCuCGa- -3'
miRNA:   3'- caCGUCGGCaa-GC-AGCUCUUGG-GCaa -5'
31264 5' -55.4 NC_006560.1 + 58836 0.68 0.848407
Target:  5'- -cGCAGCUGcaCGUCGGGGcgGCCCu-- -3'
miRNA:   3'- caCGUCGGCaaGCAGCUCU--UGGGcaa -5'
31264 5' -55.4 NC_006560.1 + 113747 0.68 0.848407
Target:  5'- gGUGCAGUaCGUgCG-CGAGAGCCCc-- -3'
miRNA:   3'- -CACGUCG-GCAaGCaGCUCUUGGGcaa -5'
31264 5' -55.4 NC_006560.1 + 66624 0.68 0.814685
Target:  5'- cGUGCAGCCGcucUCGgcgCGAcaGGACCCu-- -3'
miRNA:   3'- -CACGUCGGCa--AGCa--GCU--CUUGGGcaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.