miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31265 3' -56.7 NC_006560.1 + 4104 0.66 0.894494
Target:  5'- cGGcGCaGGCUGGCGGCgaggaagcccuucugCGCGCGGucGUAg -3'
miRNA:   3'- -CCaUGcUCGACUGCCG---------------GUGCGCC--UAU- -5'
31265 3' -56.7 NC_006560.1 + 120944 0.66 0.891848
Target:  5'- --cACGGGCUcGGUGGCUuuGCGGAUGu -3'
miRNA:   3'- ccaUGCUCGA-CUGCCGGugCGCCUAU- -5'
31265 3' -56.7 NC_006560.1 + 66760 0.66 0.891848
Target:  5'- cGGaggGCGAGgacGACGGCCcccGCGCGGu-- -3'
miRNA:   3'- -CCa--UGCUCga-CUGCCGG---UGCGCCuau -5'
31265 3' -56.7 NC_006560.1 + 103031 0.66 0.885076
Target:  5'- cGGUcgacgcGCgGGGCgcgGGCGGCCGCuCGGGg- -3'
miRNA:   3'- -CCA------UG-CUCGa--CUGCCGGUGcGCCUau -5'
31265 3' -56.7 NC_006560.1 + 81199 0.66 0.885076
Target:  5'- gGGUGgGGGCgcGACGGCgAC-CGGGa- -3'
miRNA:   3'- -CCAUgCUCGa-CUGCCGgUGcGCCUau -5'
31265 3' -56.7 NC_006560.1 + 64070 0.66 0.885076
Target:  5'- gGGgccACGuccuGCgUGAUGGCCGCGaGGGUGg -3'
miRNA:   3'- -CCa--UGCu---CG-ACUGCCGGUGCgCCUAU- -5'
31265 3' -56.7 NC_006560.1 + 22310 0.66 0.885076
Target:  5'- cGGcgACGAGCUcGCGGagcuCGCGGAg- -3'
miRNA:   3'- -CCa-UGCUCGAcUGCCggu-GCGCCUau -5'
31265 3' -56.7 NC_006560.1 + 81430 0.66 0.885076
Target:  5'- --cGCGGGCcggGGCGGCCccgguCGCGGc-- -3'
miRNA:   3'- ccaUGCUCGa--CUGCCGGu----GCGCCuau -5'
31265 3' -56.7 NC_006560.1 + 48973 0.66 0.885076
Target:  5'- gGGgcCGcGCUGACGGCgGCGCc---- -3'
miRNA:   3'- -CCauGCuCGACUGCCGgUGCGccuau -5'
31265 3' -56.7 NC_006560.1 + 98191 0.66 0.885076
Target:  5'- aGGgccuCGGGgacGugGGCCGCGCGGu-- -3'
miRNA:   3'- -CCau--GCUCga-CugCCGGUGCGCCuau -5'
31265 3' -56.7 NC_006560.1 + 97555 0.66 0.884386
Target:  5'- uGGUGCGAGCUGcagaaccGCGaGCUgACGCuguGGAa- -3'
miRNA:   3'- -CCAUGCUCGAC-------UGC-CGG-UGCG---CCUau -5'
31265 3' -56.7 NC_006560.1 + 32118 0.66 0.880906
Target:  5'- gGGgcaGCGAGCgGggcccggggccggucACGGCCGgGCGGGg- -3'
miRNA:   3'- -CCa--UGCUCGaC---------------UGCCGGUgCGCCUau -5'
31265 3' -56.7 NC_006560.1 + 77190 0.66 0.878082
Target:  5'- cGG-ACGAGCgccGCGcGCCGgaccUGCGGAUGg -3'
miRNA:   3'- -CCaUGCUCGac-UGC-CGGU----GCGCCUAU- -5'
31265 3' -56.7 NC_006560.1 + 32826 0.66 0.878082
Target:  5'- --cAUGGGCgcucAgGGCCACGCGGGc- -3'
miRNA:   3'- ccaUGCUCGac--UgCCGGUGCGCCUau -5'
31265 3' -56.7 NC_006560.1 + 18927 0.66 0.878082
Target:  5'- cGUcCGuGCgcGGCGuGCCGCGCGGGg- -3'
miRNA:   3'- cCAuGCuCGa-CUGC-CGGUGCGCCUau -5'
31265 3' -56.7 NC_006560.1 + 128636 0.66 0.878082
Target:  5'- uGGgGCGGGUgcgGACGcuccGCCGCGgGGAg- -3'
miRNA:   3'- -CCaUGCUCGa--CUGC----CGGUGCgCCUau -5'
31265 3' -56.7 NC_006560.1 + 122625 0.66 0.875941
Target:  5'- ---cCGGGCUGacccgcccgccccuGCGGCC-CGCGGGg- -3'
miRNA:   3'- ccauGCUCGAC--------------UGCCGGuGCGCCUau -5'
31265 3' -56.7 NC_006560.1 + 56449 0.66 0.870871
Target:  5'- gGGU-CGAGgaGGCGGCCcucgGCGCGc--- -3'
miRNA:   3'- -CCAuGCUCgaCUGCCGG----UGCGCcuau -5'
31265 3' -56.7 NC_006560.1 + 55354 0.66 0.870871
Target:  5'- uGGUGCuccAGCacgggGACGGUCGCG-GGGUAg -3'
miRNA:   3'- -CCAUGc--UCGa----CUGCCGGUGCgCCUAU- -5'
31265 3' -56.7 NC_006560.1 + 81617 0.66 0.870871
Target:  5'- --cGCGAGCUGcACccgGGgCAUGCGGAc- -3'
miRNA:   3'- ccaUGCUCGAC-UG---CCgGUGCGCCUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.