miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31265 5' -53.2 NC_006560.1 + 87895 0.76 0.542317
Target:  5'- cGCCGUCCCGGCCGCgccccagGCg-- -3'
miRNA:   3'- -CGGUAGGGCCGGCGauauuagCGaac -5'
31265 5' -53.2 NC_006560.1 + 135341 0.74 0.650298
Target:  5'- aGCCGUCgucggCCGGCCGCggaccggAGUCGCg-- -3'
miRNA:   3'- -CGGUAG-----GGCCGGCGaua----UUAGCGaac -5'
31265 5' -53.2 NC_006560.1 + 99549 0.71 0.781475
Target:  5'- cGUCGUCgCGGUCGUcGUGGUCGCa-- -3'
miRNA:   3'- -CGGUAGgGCCGGCGaUAUUAGCGaac -5'
31265 5' -53.2 NC_006560.1 + 68981 0.71 0.790858
Target:  5'- cGCCc-CCCGGCaCGCUGauGUCGCg-- -3'
miRNA:   3'- -CGGuaGGGCCG-GCGAUauUAGCGaac -5'
31265 5' -53.2 NC_006560.1 + 43126 0.71 0.800092
Target:  5'- uCCGUCgCGGCCGCgggGUcggGGUCGCg-- -3'
miRNA:   3'- cGGUAGgGCCGGCGa--UA---UUAGCGaac -5'
31265 5' -53.2 NC_006560.1 + 105497 0.7 0.833656
Target:  5'- cCCGUCCgCGGCCGCgcuccugCGCUc- -3'
miRNA:   3'- cGGUAGG-GCCGGCGauauua-GCGAac -5'
31265 5' -53.2 NC_006560.1 + 88909 0.7 0.83535
Target:  5'- cGCCGg-CCGGCCGUgccuGUCGCUc- -3'
miRNA:   3'- -CGGUagGGCCGGCGauauUAGCGAac -5'
31265 5' -53.2 NC_006560.1 + 147500 0.69 0.865228
Target:  5'- cGCUGUCCuCGGCgucgucgccgucguCGCUGUcGUCGCUg- -3'
miRNA:   3'- -CGGUAGG-GCCG--------------GCGAUAuUAGCGAac -5'
31265 5' -53.2 NC_006560.1 + 56300 0.69 0.88231
Target:  5'- cGCCA-CgCGGCCGCcGUAGUgCGCg-- -3'
miRNA:   3'- -CGGUaGgGCCGGCGaUAUUA-GCGaac -5'
31265 5' -53.2 NC_006560.1 + 7750 0.69 0.896167
Target:  5'- uGCCGcucgagCaCCGGCCGCUGUu-UCGCc-- -3'
miRNA:   3'- -CGGUa-----G-GGCCGGCGAUAuuAGCGaac -5'
31265 5' -53.2 NC_006560.1 + 129772 0.69 0.896167
Target:  5'- cGCCAUCaUCGGCCuGCUGgacgCGCa-- -3'
miRNA:   3'- -CGGUAG-GGCCGG-CGAUauuaGCGaac -5'
31265 5' -53.2 NC_006560.1 + 106583 0.69 0.896167
Target:  5'- gGCCGgggCCUGGCCGCcccGGUCGUc-- -3'
miRNA:   3'- -CGGUa--GGGCCGGCGauaUUAGCGaac -5'
31265 5' -53.2 NC_006560.1 + 27790 0.69 0.896167
Target:  5'- cGCCGcgCCCGGCCGCcGUuccuucggCGCg-- -3'
miRNA:   3'- -CGGUa-GGGCCGGCGaUAuua-----GCGaac -5'
31265 5' -53.2 NC_006560.1 + 28380 0.68 0.915142
Target:  5'- cGCCGUCuCCGGCCcGCcguUGGUcCGCg-- -3'
miRNA:   3'- -CGGUAG-GGCCGG-CGau-AUUA-GCGaac -5'
31265 5' -53.2 NC_006560.1 + 76049 0.68 0.915142
Target:  5'- cGCCGaCCCGGCCGCcgcggcggaacUGgu-UCGCa-- -3'
miRNA:   3'- -CGGUaGGGCCGGCG-----------AUauuAGCGaac -5'
31265 5' -53.2 NC_006560.1 + 145754 0.68 0.920973
Target:  5'- cGCCcccgCCCGGCCGCcccccgCGCg-- -3'
miRNA:   3'- -CGGua--GGGCCGGCGauauuaGCGaac -5'
31265 5' -53.2 NC_006560.1 + 123168 0.68 0.926554
Target:  5'- cGCCAacaUCCUGGUCGCgcUGAaCGCg-- -3'
miRNA:   3'- -CGGU---AGGGCCGGCGauAUUaGCGaac -5'
31265 5' -53.2 NC_006560.1 + 109054 0.68 0.926554
Target:  5'- cGCCca-CCGGCCGCac--GUCGCUc- -3'
miRNA:   3'- -CGGuagGGCCGGCGauauUAGCGAac -5'
31265 5' -53.2 NC_006560.1 + 125514 0.68 0.931885
Target:  5'- cGCCuccgCgCCGGCCGCgGUGcgCGCc-- -3'
miRNA:   3'- -CGGua--G-GGCCGGCGaUAUuaGCGaac -5'
31265 5' -53.2 NC_006560.1 + 99169 0.67 0.936966
Target:  5'- gGCCGUCCCGGgCGCcg----CGCc-- -3'
miRNA:   3'- -CGGUAGGGCCgGCGauauuaGCGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.