miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31266 3' -58.5 NC_006560.1 + 130938 0.66 0.850688
Target:  5'- gGUCca--CGCg-GCCCCGgGGGCCCu -3'
miRNA:   3'- gCAGcaagGCGagUGGGGCgUCUGGG- -5'
31266 3' -58.5 NC_006560.1 + 142408 0.66 0.850688
Target:  5'- ------cCCGCcgCGCCCC-CGGACCCc -3'
miRNA:   3'- gcagcaaGGCGa-GUGGGGcGUCUGGG- -5'
31266 3' -58.5 NC_006560.1 + 69834 0.66 0.850688
Target:  5'- gGUCGg---GgaCGCCCUGCGGGCCa -3'
miRNA:   3'- gCAGCaaggCgaGUGGGGCGUCUGGg -5'
31266 3' -58.5 NC_006560.1 + 37695 0.66 0.850688
Target:  5'- gCGcCGggCCGCUCuugaugguCCCCGCGcugaacggacGGCCg -3'
miRNA:   3'- -GCaGCaaGGCGAGu-------GGGGCGU----------CUGGg -5'
31266 3' -58.5 NC_006560.1 + 24498 0.66 0.850688
Target:  5'- -cUCcUUCCuGCUCGCCgCGCuGGCCa -3'
miRNA:   3'- gcAGcAAGG-CGAGUGGgGCGuCUGGg -5'
31266 3' -58.5 NC_006560.1 + 560 0.66 0.850688
Target:  5'- gCGUCcc-CCGCgCGCCCCGuCGGuCUCg -3'
miRNA:   3'- -GCAGcaaGGCGaGUGGGGC-GUCuGGG- -5'
31266 3' -58.5 NC_006560.1 + 148273 0.66 0.850688
Target:  5'- gCG-CGgggCCGCgagCGCggCCGUAGACCCc -3'
miRNA:   3'- -GCaGCaa-GGCGa--GUGg-GGCGUCUGGG- -5'
31266 3' -58.5 NC_006560.1 + 28743 0.66 0.850688
Target:  5'- gGUCGcgccaCCGCguccCGCCCCGuCGGgggauGCCCu -3'
miRNA:   3'- gCAGCaa---GGCGa---GUGGGGC-GUC-----UGGG- -5'
31266 3' -58.5 NC_006560.1 + 30716 0.66 0.850688
Target:  5'- cCG-CGagCCGCcauGCCCCGCccacccgcccAGGCCCg -3'
miRNA:   3'- -GCaGCaaGGCGag-UGGGGCG----------UCUGGG- -5'
31266 3' -58.5 NC_006560.1 + 15488 0.66 0.850688
Target:  5'- gGUCGgcgaCgCGCUCgggGCCCCGCccccgAGuCCCg -3'
miRNA:   3'- gCAGCaa--G-GCGAG---UGGGGCG-----UCuGGG- -5'
31266 3' -58.5 NC_006560.1 + 118460 0.66 0.849921
Target:  5'- aCGUCcugaCGCUgGCCCCGgGGagcgagcGCCCg -3'
miRNA:   3'- -GCAGcaagGCGAgUGGGGCgUC-------UGGG- -5'
31266 3' -58.5 NC_006560.1 + 99446 0.66 0.842934
Target:  5'- gCGaUgGUUUCGUUCGCCCCGgGcGCCg -3'
miRNA:   3'- -GC-AgCAAGGCGAGUGGGGCgUcUGGg -5'
31266 3' -58.5 NC_006560.1 + 33294 0.66 0.842934
Target:  5'- gGUUGggUCGCggagGCCCgGgGGGCCCg -3'
miRNA:   3'- gCAGCaaGGCGag--UGGGgCgUCUGGG- -5'
31266 3' -58.5 NC_006560.1 + 692 0.66 0.842934
Target:  5'- uCGUCGcgggccCCGUccCcCCCCGCGGcCCCg -3'
miRNA:   3'- -GCAGCaa----GGCGa-GuGGGGCGUCuGGG- -5'
31266 3' -58.5 NC_006560.1 + 27691 0.66 0.842934
Target:  5'- gGUCGgggUgCGC-CG-CCCGCGGuCCCg -3'
miRNA:   3'- gCAGCa--AgGCGaGUgGGGCGUCuGGG- -5'
31266 3' -58.5 NC_006560.1 + 43865 0.66 0.842934
Target:  5'- gCGcCGgcgCCaGCgggGCCCCGC-GACCCa -3'
miRNA:   3'- -GCaGCaa-GG-CGag-UGGGGCGuCUGGG- -5'
31266 3' -58.5 NC_006560.1 + 68939 0.66 0.842934
Target:  5'- uGUCGg-CCGCccucaaucaccUCACCCCGCGcucGGCgCg -3'
miRNA:   3'- gCAGCaaGGCG-----------AGUGGGGCGU---CUGgG- -5'
31266 3' -58.5 NC_006560.1 + 24041 0.66 0.842934
Target:  5'- aCGcCGacgCCGCcCGCCCgCGCccccGGCCCg -3'
miRNA:   3'- -GCaGCaa-GGCGaGUGGG-GCGu---CUGGG- -5'
31266 3' -58.5 NC_006560.1 + 30682 0.66 0.842934
Target:  5'- -cUCGgggccccCCGUg-GCCCCGguGGCCCc -3'
miRNA:   3'- gcAGCaa-----GGCGagUGGGGCguCUGGG- -5'
31266 3' -58.5 NC_006560.1 + 67507 0.66 0.842934
Target:  5'- aGUCGgcCCGCgcCGCCCa-CGGcACCCa -3'
miRNA:   3'- gCAGCaaGGCGa-GUGGGgcGUC-UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.