miRNA display CGI


Results 1 - 20 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31266 5' -54.8 NC_006560.1 + 53478 0.66 0.950029
Target:  5'- cGAGGCcgcgGCgGCGCGcGAGGaCGACGAc -3'
miRNA:   3'- -CUCCGca--UGaUGUGC-CUCUcGCUGCU- -5'
31266 5' -54.8 NC_006560.1 + 139543 0.72 0.665447
Target:  5'- gGGGGCGgggGCggaaggGCGUGGuGGGCGACGAg -3'
miRNA:   3'- -CUCCGCa--UGa-----UGUGCCuCUCGCUGCU- -5'
31266 5' -54.8 NC_006560.1 + 100851 0.72 0.675676
Target:  5'- aGGGGCGgugucgGgACGGAGcGCGACGAg -3'
miRNA:   3'- -CUCCGCauga--UgUGCCUCuCGCUGCU- -5'
31266 5' -54.8 NC_006560.1 + 65117 0.72 0.675676
Target:  5'- cGGGGCGgGC--CGCGG-GGGCGGCGAa -3'
miRNA:   3'- -CUCCGCaUGauGUGCCuCUCGCUGCU- -5'
31266 5' -54.8 NC_006560.1 + 66717 0.71 0.717139
Target:  5'- gGGGGCGUGCUGCcgggccagggccggGaagucgcccggguggCGGAGGGCGAgGAc -3'
miRNA:   3'- -CUCCGCAUGAUG--------------U---------------GCCUCUCGCUgCU- -5'
31266 5' -54.8 NC_006560.1 + 34443 0.71 0.726097
Target:  5'- aGAGGCGgcgGCggcggugguCGCGGGGGGCGuucGCGGg -3'
miRNA:   3'- -CUCCGCa--UGau-------GUGCCUCUCGC---UGCU- -5'
31266 5' -54.8 NC_006560.1 + 120113 0.71 0.745758
Target:  5'- -cGGCGUGCUGCGCccuGGgccccGGGGCGugGu -3'
miRNA:   3'- cuCCGCAUGAUGUG---CC-----UCUCGCugCu -5'
31266 5' -54.8 NC_006560.1 + 3936 0.71 0.745758
Target:  5'- gGGGGCG-GCgcCGCGGucGGCGGCGAg -3'
miRNA:   3'- -CUCCGCaUGauGUGCCucUCGCUGCU- -5'
31266 5' -54.8 NC_006560.1 + 72045 0.71 0.745758
Target:  5'- cGAGGCGcGgUGgGCGG-GGGCGAUGGu -3'
miRNA:   3'- -CUCCGCaUgAUgUGCCuCUCGCUGCU- -5'
31266 5' -54.8 NC_006560.1 + 62959 0.72 0.655192
Target:  5'- -cGGCGaGCUGCGCcGAG-GCGACGGu -3'
miRNA:   3'- cuCCGCaUGAUGUGcCUCuCGCUGCU- -5'
31266 5' -54.8 NC_006560.1 + 86502 0.73 0.6038
Target:  5'- cGGGCGUGCU-CugGGGGAuGCGggaACGAa -3'
miRNA:   3'- cUCCGCAUGAuGugCCUCU-CGC---UGCU- -5'
31266 5' -54.8 NC_006560.1 + 15035 0.74 0.583338
Target:  5'- -cGGCGUcggagACUcGCGcCGGGGGGCGACGGc -3'
miRNA:   3'- cuCCGCA-----UGA-UGU-GCCUCUCGCUGCU- -5'
31266 5' -54.8 NC_006560.1 + 134549 0.79 0.337334
Target:  5'- cGGGCGUGCU-CGCGGAGcgcgcggcauGCGACGAu -3'
miRNA:   3'- cUCCGCAUGAuGUGCCUCu---------CGCUGCU- -5'
31266 5' -54.8 NC_006560.1 + 137167 0.77 0.402287
Target:  5'- cGGGGCGgaggGCGCGGAGGGCG-CGGa -3'
miRNA:   3'- -CUCCGCaugaUGUGCCUCUCGCuGCU- -5'
31266 5' -54.8 NC_006560.1 + 146837 0.77 0.419721
Target:  5'- uGGGCGUGCUGCgGCGGcgcggggcGGGGCGGCGc -3'
miRNA:   3'- cUCCGCAUGAUG-UGCC--------UCUCGCUGCu -5'
31266 5' -54.8 NC_006560.1 + 72250 0.77 0.432194
Target:  5'- gGGGGCGgagggacccccgggACcGCGCGGGGGGCGACGu -3'
miRNA:   3'- -CUCCGCa-------------UGaUGUGCCUCUCGCUGCu -5'
31266 5' -54.8 NC_006560.1 + 88606 0.75 0.528944
Target:  5'- cGGGCGccGCguccucguccagcACGCGGGGGGCGACGAa -3'
miRNA:   3'- cUCCGCa-UGa------------UGUGCCUCUCGCUGCU- -5'
31266 5' -54.8 NC_006560.1 + 131877 0.75 0.532916
Target:  5'- cGGGGCGcggucgcgGCgUACGCGGAGGGCGcCGGc -3'
miRNA:   3'- -CUCCGCa-------UG-AUGUGCCUCUCGCuGCU- -5'
31266 5' -54.8 NC_006560.1 + 143381 0.74 0.563017
Target:  5'- cAGGCGUAC----CGGGGGGCGGCGGc -3'
miRNA:   3'- cUCCGCAUGauguGCCUCUCGCUGCU- -5'
31266 5' -54.8 NC_006560.1 + 18937 0.74 0.563017
Target:  5'- -cGGCGUGCcGCGCGGGGccCGGCGGg -3'
miRNA:   3'- cuCCGCAUGaUGUGCCUCucGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.