miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31267 3' -55.8 NC_006560.1 + 51527 0.66 0.907916
Target:  5'- gGCGGCGcgcgcGCUCCUg----GCCGGCGCc -3'
miRNA:   3'- -UGUCGU-----CGAGGAaguagUGGCCGUGc -5'
31267 3' -55.8 NC_006560.1 + 34504 0.72 0.600418
Target:  5'- --cGCGGCUCCg--GagGCCGGCACGg -3'
miRNA:   3'- uguCGUCGAGGaagUagUGGCCGUGC- -5'
31267 3' -55.8 NC_006560.1 + 99856 0.72 0.61073
Target:  5'- -aGGUAGCUCC--CGUCGCCggggGGCGCGg -3'
miRNA:   3'- ugUCGUCGAGGaaGUAGUGG----CCGUGC- -5'
31267 3' -55.8 NC_006560.1 + 93661 0.71 0.621058
Target:  5'- cGCGGCuucGGCUCCggCGUCGgCGGCggACGa -3'
miRNA:   3'- -UGUCG---UCGAGGaaGUAGUgGCCG--UGC- -5'
31267 3' -55.8 NC_006560.1 + 91935 0.7 0.672664
Target:  5'- -aGGCGGCcaagagCCg-CAUCGCCGGCAUGc -3'
miRNA:   3'- ugUCGUCGa-----GGaaGUAGUGGCCGUGC- -5'
31267 3' -55.8 NC_006560.1 + 121948 0.7 0.723419
Target:  5'- gGCGcGCGGCUCUg----CGCCGGCGCc -3'
miRNA:   3'- -UGU-CGUCGAGGaaguaGUGGCCGUGc -5'
31267 3' -55.8 NC_006560.1 + 52359 0.69 0.733368
Target:  5'- gGCAGC-GCUCCgacgaccugCAgcccgcguuccUCACCGGCGCc -3'
miRNA:   3'- -UGUCGuCGAGGaa-------GU-----------AGUGGCCGUGc -5'
31267 3' -55.8 NC_006560.1 + 8679 0.69 0.743226
Target:  5'- gGCGGCGGCgCCUgagcgcCGUCuGCUGGCGCc -3'
miRNA:   3'- -UGUCGUCGaGGAa-----GUAG-UGGCCGUGc -5'
31267 3' -55.8 NC_006560.1 + 4751 0.69 0.752986
Target:  5'- gGCGGCGGC-CCgcggCggCGgCGGCGCGg -3'
miRNA:   3'- -UGUCGUCGaGGaa--GuaGUgGCCGUGC- -5'
31267 3' -55.8 NC_006560.1 + 140518 0.72 0.579873
Target:  5'- gGCuGCGGggCCgcuUCAUCGCCGgGCGCGg -3'
miRNA:   3'- -UGuCGUCgaGGa--AGUAGUGGC-CGUGC- -5'
31267 3' -55.8 NC_006560.1 + 5062 0.72 0.579873
Target:  5'- --cGCgAGCUCCgcgagcUCGUCGCCGGCguGCGg -3'
miRNA:   3'- uguCG-UCGAGGa-----AGUAGUGGCCG--UGC- -5'
31267 3' -55.8 NC_006560.1 + 2008 0.72 0.569654
Target:  5'- gGCGGCGGCgUCCUcggCGUCGgcgagcagcgugUCGGCGCGg -3'
miRNA:   3'- -UGUCGUCG-AGGAa--GUAGU------------GGCCGUGC- -5'
31267 3' -55.8 NC_006560.1 + 16524 0.75 0.407208
Target:  5'- cGCAGCAGCUCCgcgg-CGCUGGgGCGc -3'
miRNA:   3'- -UGUCGUCGAGGaaguaGUGGCCgUGC- -5'
31267 3' -55.8 NC_006560.1 + 134888 0.75 0.407208
Target:  5'- --cGCGGggCCggcgCAUCACCGGCACGa -3'
miRNA:   3'- uguCGUCgaGGaa--GUAGUGGCCGUGC- -5'
31267 3' -55.8 NC_006560.1 + 66185 0.74 0.452176
Target:  5'- cGCAGCAcuGCUCCUg-GUC-CCGGCGCu -3'
miRNA:   3'- -UGUCGU--CGAGGAagUAGuGGCCGUGc -5'
31267 3' -55.8 NC_006560.1 + 4303 0.73 0.539294
Target:  5'- cGCGGUccAGCUCCa-CGUCGCCGGC-CGu -3'
miRNA:   3'- -UGUCG--UCGAGGaaGUAGUGGCCGuGC- -5'
31267 3' -55.8 NC_006560.1 + 54422 0.73 0.549358
Target:  5'- uACGGCAGCcCCagcgCGUCGCgGGCGCc -3'
miRNA:   3'- -UGUCGUCGaGGaa--GUAGUGgCCGUGc -5'
31267 3' -55.8 NC_006560.1 + 129809 0.73 0.549358
Target:  5'- cGCAGCGGCUgCCgcacgCACCGGCAg- -3'
miRNA:   3'- -UGUCGUCGA-GGaaguaGUGGCCGUgc -5'
31267 3' -55.8 NC_006560.1 + 24487 0.73 0.549358
Target:  5'- cGCGGCGGCcucUCCUUCcugcUCGCCGcGCugGc -3'
miRNA:   3'- -UGUCGUCG---AGGAAGu---AGUGGC-CGugC- -5'
31267 3' -55.8 NC_006560.1 + 136946 0.72 0.569654
Target:  5'- gGCGGCAccuuccGCUCCUUCGagGCCGugcuGCGCGa -3'
miRNA:   3'- -UGUCGU------CGAGGAAGUagUGGC----CGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.