miRNA display CGI


Results 1 - 20 of 132 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31267 5' -61.6 NC_006560.1 + 72619 0.66 0.65525
Target:  5'- cGCCGgGCCGCGC---GGC-ACGCCGc -3'
miRNA:   3'- -CGGCaCGGCGUGgacCCGaUGCGGUa -5'
31267 5' -61.6 NC_006560.1 + 24281 0.66 0.65525
Target:  5'- cGCUG-GCCGCGCgCUGcGGCc-CGCCc- -3'
miRNA:   3'- -CGGCaCGGCGUG-GAC-CCGauGCGGua -5'
31267 5' -61.6 NC_006560.1 + 32149 0.66 0.65525
Target:  5'- gGCCGgGCgGgGCC-GGGCguccccgGCGCCGa -3'
miRNA:   3'- -CGGCaCGgCgUGGaCCCGa------UGCGGUa -5'
31267 5' -61.6 NC_006560.1 + 83695 0.66 0.65525
Target:  5'- gGCCGcGCCGCGCUUugcGcGGUU-CGCCGg -3'
miRNA:   3'- -CGGCaCGGCGUGGA---C-CCGAuGCGGUa -5'
31267 5' -61.6 NC_006560.1 + 68444 0.66 0.65525
Target:  5'- aCCGcgGCCGC-CCUGGGgCcgGCGCgGa -3'
miRNA:   3'- cGGCa-CGGCGuGGACCC-Ga-UGCGgUa -5'
31267 5' -61.6 NC_006560.1 + 9620 0.66 0.65525
Target:  5'- gGCCccugggGCCGCGCCgaagGGGUgggUGCgGCCGg -3'
miRNA:   3'- -CGGca----CGGCGUGGa---CCCG---AUG-CGGUa -5'
31267 5' -61.6 NC_006560.1 + 22852 0.66 0.65525
Target:  5'- gGCgCGUGCUcuacgGCgGCCUGGGCgACaGCCGc -3'
miRNA:   3'- -CG-GCACGG-----CG-UGGACCCGaUG-CGGUa -5'
31267 5' -61.6 NC_006560.1 + 24986 0.66 0.645281
Target:  5'- cGCCGUGCCGCugCc--GCcGCGCgAg -3'
miRNA:   3'- -CGGCACGGCGugGaccCGaUGCGgUa -5'
31267 5' -61.6 NC_006560.1 + 23497 0.66 0.645281
Target:  5'- cGCCGacGCCGCcgcggaguGCCUGGcggucuGCcGCGCCGUc -3'
miRNA:   3'- -CGGCa-CGGCG--------UGGACC------CGaUGCGGUA- -5'
31267 5' -61.6 NC_006560.1 + 48791 0.66 0.645281
Target:  5'- gGCCuGcGCUGCgACCUGGaGCaggcGCGCCAg -3'
miRNA:   3'- -CGG-CaCGGCG-UGGACC-CGa---UGCGGUa -5'
31267 5' -61.6 NC_006560.1 + 31754 0.66 0.645281
Target:  5'- uGCUGggcgGCCGCagcuuccacaGCCUGGaCUcGCGCCAc -3'
miRNA:   3'- -CGGCa---CGGCG----------UGGACCcGA-UGCGGUa -5'
31267 5' -61.6 NC_006560.1 + 24805 0.66 0.645281
Target:  5'- cGCUGgcccGCCGCgcgcgACCUGcGCcGCGCCGUg -3'
miRNA:   3'- -CGGCa---CGGCG-----UGGACcCGaUGCGGUA- -5'
31267 5' -61.6 NC_006560.1 + 48970 0.66 0.645281
Target:  5'- cCCGggGCCGCGCUgacGGCgGCGCCc- -3'
miRNA:   3'- cGGCa-CGGCGUGGac-CCGaUGCGGua -5'
31267 5' -61.6 NC_006560.1 + 99358 0.66 0.635303
Target:  5'- cGCCGgcugGgCGUACUgGGGCggggGCGCCc- -3'
miRNA:   3'- -CGGCa---CgGCGUGGaCCCGa---UGCGGua -5'
31267 5' -61.6 NC_006560.1 + 99463 0.66 0.635303
Target:  5'- cCCGggcGCCgGCGCCggacGGGC-GCGCCGc -3'
miRNA:   3'- cGGCa--CGG-CGUGGa---CCCGaUGCGGUa -5'
31267 5' -61.6 NC_006560.1 + 50315 0.66 0.635303
Target:  5'- cGUCGgagauccugGCCGC-CCUcgcGGGCU-CGCCAc -3'
miRNA:   3'- -CGGCa--------CGGCGuGGA---CCCGAuGCGGUa -5'
31267 5' -61.6 NC_006560.1 + 89642 0.66 0.635303
Target:  5'- cGCgCGUGCCcgGCCgagGGGCUG-GCCGa -3'
miRNA:   3'- -CG-GCACGGcgUGGa--CCCGAUgCGGUa -5'
31267 5' -61.6 NC_006560.1 + 130469 0.66 0.635303
Target:  5'- gGCCGggacccCCGCACC-GGGCUggugGCGCgGa -3'
miRNA:   3'- -CGGCac----GGCGUGGaCCCGA----UGCGgUa -5'
31267 5' -61.6 NC_006560.1 + 54930 0.66 0.635303
Target:  5'- gGCCGggGCgGcCAUCgucgGGGCUcgcGCGCCGg -3'
miRNA:   3'- -CGGCa-CGgC-GUGGa---CCCGA---UGCGGUa -5'
31267 5' -61.6 NC_006560.1 + 10925 0.66 0.635303
Target:  5'- cGCCG-GCgGCGCCUuaaauGGCccccGCGCCAg -3'
miRNA:   3'- -CGGCaCGgCGUGGAc----CCGa---UGCGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.