miRNA display CGI


Results 1 - 20 of 207 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31268 3' -63.2 NC_006560.1 + 50290 0.65 0.613738
Target:  5'- cGGGGGuaCCUGG-GGGCGGUggacgcgUCggagauccuggccGCCCu -3'
miRNA:   3'- -CCCUC--GGACCgCCCGCCGa------AGa------------CGGG- -5'
31268 3' -63.2 NC_006560.1 + 15055 0.66 0.607893
Target:  5'- gGGGGGCgacggcgucGGUGGGgGGCgggggcUCUGgCCCc -3'
miRNA:   3'- -CCCUCGga-------CCGCCCgCCGa-----AGAC-GGG- -5'
31268 3' -63.2 NC_006560.1 + 26830 0.66 0.607893
Target:  5'- gGGGAcGCCggggacccggGGCGcGGcCGGCcgCcGCCCc -3'
miRNA:   3'- -CCCU-CGGa---------CCGC-CC-GCCGaaGaCGGG- -5'
31268 3' -63.2 NC_006560.1 + 80146 0.66 0.607893
Target:  5'- cGGGGCaCUGGUcccgGGGCGGg-UCgagGUCCc -3'
miRNA:   3'- cCCUCG-GACCG----CCCGCCgaAGa--CGGG- -5'
31268 3' -63.2 NC_006560.1 + 92572 0.66 0.607893
Target:  5'- cGGGAaCUgGGCcaacguucuGGGCGGCaagaacgcCUGCCCg -3'
miRNA:   3'- -CCCUcGGaCCG---------CCCGCCGaa------GACGGG- -5'
31268 3' -63.2 NC_006560.1 + 27592 0.66 0.607893
Target:  5'- cGGcGCgCgGGUGGGCGcucGCgccugCUGCCCg -3'
miRNA:   3'- cCCuCG-GaCCGCCCGC---CGaa---GACGGG- -5'
31268 3' -63.2 NC_006560.1 + 140347 0.66 0.607893
Target:  5'- cGGGAcaGCCccGCGGGCgucGGCgcggCgcgGCCCg -3'
miRNA:   3'- -CCCU--CGGacCGCCCG---CCGaa--Ga--CGGG- -5'
31268 3' -63.2 NC_006560.1 + 2089 0.66 0.604972
Target:  5'- cGGGGGCCcGGCGucggcgcgcagcacGaGCGGCgcggcgUCgggGUCCg -3'
miRNA:   3'- -CCCUCGGaCCGC--------------C-CGCCGa-----AGa--CGGG- -5'
31268 3' -63.2 NC_006560.1 + 102396 0.66 0.604972
Target:  5'- cGGGAGgcCCUcGGCGGccucgggcgcggccGCGGCgUCcGCCUc -3'
miRNA:   3'- -CCCUC--GGA-CCGCC--------------CGCCGaAGaCGGG- -5'
31268 3' -63.2 NC_006560.1 + 133968 0.66 0.603026
Target:  5'- cGGGGGCCgcggcgcccccccccGGCucgcgccccaggucGGCGGCgcgCUGCUCg -3'
miRNA:   3'- -CCCUCGGa--------------CCGc-------------CCGCCGaa-GACGGG- -5'
31268 3' -63.2 NC_006560.1 + 1153 0.66 0.598164
Target:  5'- gGGGuuCCUGGCGGcCGGgUUCUcugcggaccGCUCg -3'
miRNA:   3'- -CCCucGGACCGCCcGCCgAAGA---------CGGG- -5'
31268 3' -63.2 NC_006560.1 + 150212 0.66 0.598164
Target:  5'- uGGcGAGCgcgcggacgCUGcCGGGCGuGCUggUUGCCCg -3'
miRNA:   3'- -CC-CUCG---------GACcGCCCGC-CGAa-GACGGG- -5'
31268 3' -63.2 NC_006560.1 + 41280 0.66 0.598164
Target:  5'- -aGGGCCaGGaacgucCGGGCGGUcgcgcggCUGCCCc -3'
miRNA:   3'- ccCUCGGaCC------GCCCGCCGaa-----GACGGG- -5'
31268 3' -63.2 NC_006560.1 + 116870 0.66 0.59525
Target:  5'- cGGcGGGCUUGGUgaggacgggccGGucgucggccgccucGCGGC-UCUGCCCc -3'
miRNA:   3'- -CC-CUCGGACCG-----------CC--------------CGCCGaAGACGGG- -5'
31268 3' -63.2 NC_006560.1 + 3374 0.66 0.588458
Target:  5'- cGGcGGGCg-GGCGGGCGGgCgcggGCCg -3'
miRNA:   3'- -CC-CUCGgaCCGCCCGCC-GaagaCGGg -5'
31268 3' -63.2 NC_006560.1 + 122063 0.66 0.588458
Target:  5'- cGGGGCCuuuaUGGCGGccaaGGCg---GCCCa -3'
miRNA:   3'- cCCUCGG----ACCGCCcg--CCGaagaCGGG- -5'
31268 3' -63.2 NC_006560.1 + 51729 0.66 0.588458
Target:  5'- -uGGGCCgacGcGCGGGCGGCcUCgcgGCgCa -3'
miRNA:   3'- ccCUCGGa--C-CGCCCGCCGaAGa--CGgG- -5'
31268 3' -63.2 NC_006560.1 + 146399 0.66 0.584584
Target:  5'- aGGGGGCggagcGGCGGGCGGaggcggagcggCggaGCCCc -3'
miRNA:   3'- -CCCUCGga---CCGCCCGCCgaa--------Ga--CGGG- -5'
31268 3' -63.2 NC_006560.1 + 98312 0.66 0.578781
Target:  5'- gGGGcugcuGGuCCUGGCGGGgcUGGCggCcGCCUu -3'
miRNA:   3'- -CCC-----UC-GGACCGCCC--GCCGaaGaCGGG- -5'
31268 3' -63.2 NC_006560.1 + 138787 0.66 0.578781
Target:  5'- cGGGAucgGCgaGGCGGGUGGaCgugCggcGCCUg -3'
miRNA:   3'- -CCCU---CGgaCCGCCCGCC-Gaa-Ga--CGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.