miRNA display CGI


Results 1 - 20 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31268 5' -54.7 NC_006560.1 + 42910 0.66 0.952006
Target:  5'- cCCGgGgacgAGucGACG-GCGCCGcGGUAg -3'
miRNA:   3'- -GGCgCa---UCuuCUGCuCGCGGU-CCAUg -5'
31268 5' -54.7 NC_006560.1 + 114340 0.66 0.952006
Target:  5'- cCCGCGg---GGGCGcGCGgCCGGGgGCg -3'
miRNA:   3'- -GGCGCaucuUCUGCuCGC-GGUCCaUG- -5'
31268 5' -54.7 NC_006560.1 + 8539 0.66 0.952006
Target:  5'- gCGCGUgguGGggGugGGGCGaCUGuGGcUGCg -3'
miRNA:   3'- gGCGCA---UCuuCugCUCGC-GGU-CC-AUG- -5'
31268 5' -54.7 NC_006560.1 + 58227 0.66 0.952006
Target:  5'- cUCGCc-GGAGcGACGGGgGCCGGGgGCc -3'
miRNA:   3'- -GGCGcaUCUU-CUGCUCgCGGUCCaUG- -5'
31268 5' -54.7 NC_006560.1 + 25785 0.66 0.952006
Target:  5'- gCCGCGUcgaucGGAGGAgGGggcGCGCgAGGg-- -3'
miRNA:   3'- -GGCGCA-----UCUUCUgCU---CGCGgUCCaug -5'
31268 5' -54.7 NC_006560.1 + 116122 0.66 0.952006
Target:  5'- gCGCGUGauGggGGCGAaCGCguGGUn- -3'
miRNA:   3'- gGCGCAU--CuuCUGCUcGCGguCCAug -5'
31268 5' -54.7 NC_006560.1 + 147128 0.66 0.952006
Target:  5'- gCCGCGgcGcGAGGCGcgcGCGCCGcGGcGCc -3'
miRNA:   3'- -GGCGCauC-UUCUGCu--CGCGGU-CCaUG- -5'
31268 5' -54.7 NC_006560.1 + 125493 0.66 0.947823
Target:  5'- cCUGCGccUGGggGACGcccccgccuccGCGCCGgccgcGGUGCg -3'
miRNA:   3'- -GGCGC--AUCuuCUGCu----------CGCGGU-----CCAUG- -5'
31268 5' -54.7 NC_006560.1 + 23647 0.66 0.947823
Target:  5'- cCCGCGcgccUGGcuGcGCGAgcuGCGCCuGGUGCg -3'
miRNA:   3'- -GGCGC----AUCuuC-UGCU---CGCGGuCCAUG- -5'
31268 5' -54.7 NC_006560.1 + 31532 0.66 0.947823
Target:  5'- uCCuCGacauGGAGACGGGCGCCAucGGgGCc -3'
miRNA:   3'- -GGcGCau--CUUCUGCUCGCGGU--CCaUG- -5'
31268 5' -54.7 NC_006560.1 + 146381 0.66 0.947823
Target:  5'- uCCGUGUgcucucucggcAGggGGCgGAGCGgCGGGcggagGCg -3'
miRNA:   3'- -GGCGCA-----------UCuuCUG-CUCGCgGUCCa----UG- -5'
31268 5' -54.7 NC_006560.1 + 54881 0.66 0.947823
Target:  5'- gCCGCG-AGAcGccccCGGGgGCCAGGggGCg -3'
miRNA:   3'- -GGCGCaUCUuCu---GCUCgCGGUCCa-UG- -5'
31268 5' -54.7 NC_006560.1 + 3475 0.66 0.947823
Target:  5'- gCCGCGcGGgcGGCGucGGCGUCGGcGUcgGCg -3'
miRNA:   3'- -GGCGCaUCuuCUGC--UCGCGGUC-CA--UG- -5'
31268 5' -54.7 NC_006560.1 + 129899 0.66 0.947823
Target:  5'- cCCGCGUGGggG-CG-GUGCCuGcGcACg -3'
miRNA:   3'- -GGCGCAUCuuCuGCuCGCGGuC-CaUG- -5'
31268 5' -54.7 NC_006560.1 + 34199 0.66 0.947823
Target:  5'- -gGUGgucgGGggGACGGGgGCgGGGgACg -3'
miRNA:   3'- ggCGCa---UCuuCUGCUCgCGgUCCaUG- -5'
31268 5' -54.7 NC_006560.1 + 136290 0.66 0.947392
Target:  5'- aCCGCGUcgcuGGAGucgacguuCGAGCaccagaaGCuCAGGUGCu -3'
miRNA:   3'- -GGCGCAu---CUUCu-------GCUCG-------CG-GUCCAUG- -5'
31268 5' -54.7 NC_006560.1 + 116765 0.66 0.943406
Target:  5'- gCCGCGUGuuggcgguGAAGGCGGG-GuCCAcGUACa -3'
miRNA:   3'- -GGCGCAU--------CUUCUGCUCgC-GGUcCAUG- -5'
31268 5' -54.7 NC_006560.1 + 66704 0.66 0.943406
Target:  5'- cCCgGCGgcccgGGggGGCGuGCuGCCGGGc-- -3'
miRNA:   3'- -GG-CGCa----UCuuCUGCuCG-CGGUCCaug -5'
31268 5' -54.7 NC_006560.1 + 105020 0.66 0.943406
Target:  5'- gCGCGcGGAacGGGCGcuccgcGGCGCCgccgcgggggGGGUGCu -3'
miRNA:   3'- gGCGCaUCU--UCUGC------UCGCGG----------UCCAUG- -5'
31268 5' -54.7 NC_006560.1 + 100805 0.66 0.943406
Target:  5'- gCCGuCGgcGggGgccauagcGCGGGCGCgGGGgccgGCg -3'
miRNA:   3'- -GGC-GCauCuuC--------UGCUCGCGgUCCa---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.