miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31269 3' -54.8 NC_006560.1 + 125170 0.66 0.95329
Target:  5'- uGGGCGgacgcGCGGGCCggcGGcGAaaAGAggCGGu -3'
miRNA:   3'- -CCCGCa----CGUCCGGa--UCaCU--UCUa-GCC- -5'
31269 3' -54.8 NC_006560.1 + 54550 0.66 0.95329
Target:  5'- gGGGCGcagGCAGGCCU--UGAugccGUCGc -3'
miRNA:   3'- -CCCGCa--CGUCCGGAucACUuc--UAGCc -5'
31269 3' -54.8 NC_006560.1 + 33019 0.66 0.95329
Target:  5'- uGGGCGggaAGGCCggcgAGggGAAGGgggucgCGGg -3'
miRNA:   3'- -CCCGCacgUCCGGa---UCa-CUUCUa-----GCC- -5'
31269 3' -54.8 NC_006560.1 + 14637 0.66 0.951676
Target:  5'- cGGGCG-GCAcGGCCgcaacaccaugacGGUGAuGAUCa- -3'
miRNA:   3'- -CCCGCaCGU-CCGGa------------UCACUuCUAGcc -5'
31269 3' -54.8 NC_006560.1 + 27645 0.66 0.949187
Target:  5'- cGGGCGcgggGCGcGGCCgccGcGGAGGUCGu -3'
miRNA:   3'- -CCCGCa---CGU-CCGGau-CaCUUCUAGCc -5'
31269 3' -54.8 NC_006560.1 + 81546 0.66 0.949187
Target:  5'- aGGGCGUGCucGGCCgcgcgacaGAGGAUgCGc -3'
miRNA:   3'- -CCCGCACGu-CCGGauca----CUUCUA-GCc -5'
31269 3' -54.8 NC_006560.1 + 11592 0.66 0.949187
Target:  5'- cGGGgGUcGCGGGgUUGGgGGAGAcCGGc -3'
miRNA:   3'- -CCCgCA-CGUCCgGAUCaCUUCUaGCC- -5'
31269 3' -54.8 NC_006560.1 + 33455 0.66 0.949187
Target:  5'- -cGCGgGCGGGCCcGGgcagGAGGAgaggCGGc -3'
miRNA:   3'- ccCGCaCGUCCGGaUCa---CUUCUa---GCC- -5'
31269 3' -54.8 NC_006560.1 + 148472 0.66 0.949187
Target:  5'- gGGGCG-GCGGaGCggAG-GGAGAgcgCGGa -3'
miRNA:   3'- -CCCGCaCGUC-CGgaUCaCUUCUa--GCC- -5'
31269 3' -54.8 NC_006560.1 + 146476 0.66 0.949187
Target:  5'- gGGGCGgagcgGC-GGCCgcgAGcGGAGGUgcCGGg -3'
miRNA:   3'- -CCCGCa----CGuCCGGa--UCaCUUCUA--GCC- -5'
31269 3' -54.8 NC_006560.1 + 17116 0.66 0.945295
Target:  5'- gGGGCGggaGCGGGCgCgggaccccagguacGUGuaGAGGUCGGa -3'
miRNA:   3'- -CCCGCa--CGUCCG-Gau------------CAC--UUCUAGCC- -5'
31269 3' -54.8 NC_006560.1 + 85542 0.66 0.944851
Target:  5'- gGGGCG-GgGGcGCCc-GUGggGggCGGg -3'
miRNA:   3'- -CCCGCaCgUC-CGGauCACuuCuaGCC- -5'
31269 3' -54.8 NC_006560.1 + 138598 0.66 0.944851
Target:  5'- gGGGCGgcgGCGGaCCUgcuGGUGGAGGUg-- -3'
miRNA:   3'- -CCCGCa--CGUCcGGA---UCACUUCUAgcc -5'
31269 3' -54.8 NC_006560.1 + 54355 0.66 0.944851
Target:  5'- cGGGUGggGUGGGUggGGUGggGAagacCGGg -3'
miRNA:   3'- -CCCGCa-CGUCCGgaUCACuuCUa---GCC- -5'
31269 3' -54.8 NC_006560.1 + 69527 0.66 0.93981
Target:  5'- uGGCGagccugcgGCGGGCgCUGGUgGGAGAguucgagUCGGc -3'
miRNA:   3'- cCCGCa-------CGUCCG-GAUCA-CUUCU-------AGCC- -5'
31269 3' -54.8 NC_006560.1 + 65564 0.66 0.935472
Target:  5'- gGGGCGcuucuuuaugGaCGGGCCguGUGggGGUgGGg -3'
miRNA:   3'- -CCCGCa---------C-GUCCGGauCACuuCUAgCC- -5'
31269 3' -54.8 NC_006560.1 + 5085 0.66 0.935472
Target:  5'- cGGCGUGCGGcgcGCCgccc-GGGGUCGGc -3'
miRNA:   3'- cCCGCACGUC---CGGaucacUUCUAGCC- -5'
31269 3' -54.8 NC_006560.1 + 73569 0.66 0.935472
Target:  5'- -cGCGUGCAGGCCcucgcggGGUucgcccggggcGAGGAggccCGGg -3'
miRNA:   3'- ccCGCACGUCCGGa------UCA-----------CUUCUa---GCC- -5'
31269 3' -54.8 NC_006560.1 + 81153 0.66 0.930425
Target:  5'- aGGGUGU-CGGGCC-GGUGGAacugCGGg -3'
miRNA:   3'- -CCCGCAcGUCCGGaUCACUUcua-GCC- -5'
31269 3' -54.8 NC_006560.1 + 14765 0.67 0.925138
Target:  5'- gGGGCucgGCGGGaggGGUGggGG-CGGg -3'
miRNA:   3'- -CCCGca-CGUCCggaUCACuuCUaGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.