miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31269 5' -64.7 NC_006560.1 + 60977 0.66 0.526898
Target:  5'- gGCCGuggacuGGCUCCCCga-GCCgaugaccgUCACCGa -3'
miRNA:   3'- aCGGC------CCGAGGGGaucCGGa-------GGUGGC- -5'
31269 5' -64.7 NC_006560.1 + 32444 0.74 0.16046
Target:  5'- gGCCgGGGCUCCCCcacgGGGCCgggggcugcgggcUCCcCCGg -3'
miRNA:   3'- aCGG-CCCGAGGGGa---UCCGG-------------AGGuGGC- -5'
31269 5' -64.7 NC_006560.1 + 35013 0.74 0.164773
Target:  5'- gGCCGGGCgcCCCCUccGGUCcgCCGCCGc -3'
miRNA:   3'- aCGGCCCGa-GGGGAu-CCGGa-GGUGGC- -5'
31269 5' -64.7 NC_006560.1 + 104934 0.74 0.168784
Target:  5'- cGUCGGGCUCCCC-GGGCgUCCGu-- -3'
miRNA:   3'- aCGGCCCGAGGGGaUCCGgAGGUggc -5'
31269 5' -64.7 NC_006560.1 + 145435 0.74 0.171643
Target:  5'- gGCCGGGCcucuguccccugugUCCCCUguguccccggggGGGgCUCCGCCc -3'
miRNA:   3'- aCGGCCCG--------------AGGGGA------------UCCgGAGGUGGc -5'
31269 5' -64.7 NC_006560.1 + 9610 0.73 0.181345
Target:  5'- cGCgGGGCgcggCCCCUgGGGCCg-CGCCGa -3'
miRNA:   3'- aCGgCCCGa---GGGGA-UCCGGagGUGGC- -5'
31269 5' -64.7 NC_006560.1 + 77952 0.73 0.194727
Target:  5'- gGCCGGGCcgCCCCcggccaccGGCCUCCugUu -3'
miRNA:   3'- aCGGCCCGa-GGGGau------CCGGAGGugGc -5'
31269 5' -64.7 NC_006560.1 + 88834 0.73 0.199377
Target:  5'- cGCCGGGC-CCCCgu-GUC-CCACCGa -3'
miRNA:   3'- aCGGCCCGaGGGGaucCGGaGGUGGC- -5'
31269 5' -64.7 NC_006560.1 + 24308 0.73 0.204122
Target:  5'- aGCCGGGCUCcggccgcgCCCUcGGGCCgcUCCGCg- -3'
miRNA:   3'- aCGGCCCGAG--------GGGA-UCCGG--AGGUGgc -5'
31269 5' -64.7 NC_006560.1 + 423 0.75 0.145979
Target:  5'- cUGUgGGGUUCCCC--GGCCUCCGCgGc -3'
miRNA:   3'- -ACGgCCCGAGGGGauCCGGAGGUGgC- -5'
31269 5' -64.7 NC_006560.1 + 149269 0.75 0.132374
Target:  5'- cGCCGGGCgccucCCCCUcGGCCcgCC-CCGg -3'
miRNA:   3'- aCGGCCCGa----GGGGAuCCGGa-GGuGGC- -5'
31269 5' -64.7 NC_006560.1 + 15370 0.76 0.117013
Target:  5'- gGCCGGGaCUCCCCcccGCCUCCuCCGc -3'
miRNA:   3'- aCGGCCC-GAGGGGaucCGGAGGuGGC- -5'
31269 5' -64.7 NC_006560.1 + 68001 0.81 0.054832
Target:  5'- cGUCGGGCgacgCCCCccccGGGCCUCCGCCc -3'
miRNA:   3'- aCGGCCCGa---GGGGa---UCCGGAGGUGGc -5'
31269 5' -64.7 NC_006560.1 + 112402 0.8 0.065582
Target:  5'- cUGCCGGGC-CCCC-GGGCCccccCCGCCGg -3'
miRNA:   3'- -ACGGCCCGaGGGGaUCCGGa---GGUGGC- -5'
31269 5' -64.7 NC_006560.1 + 112200 0.78 0.082416
Target:  5'- cGCCGaGCUCCCCgcGGGCC-CCGCCGc -3'
miRNA:   3'- aCGGCcCGAGGGGa-UCCGGaGGUGGC- -5'
31269 5' -64.7 NC_006560.1 + 34968 0.78 0.088894
Target:  5'- cGCCGGGCUCCgCC-GGGCC-CC-CCGg -3'
miRNA:   3'- aCGGCCCGAGG-GGaUCCGGaGGuGGC- -5'
31269 5' -64.7 NC_006560.1 + 106567 0.77 0.103328
Target:  5'- cGCCGGGUUCCUCgggggccgGGGCCUggCCGCCc -3'
miRNA:   3'- aCGGCCCGAGGGGa-------UCCGGA--GGUGGc -5'
31269 5' -64.7 NC_006560.1 + 144041 0.77 0.105938
Target:  5'- cGCCGGGCUCgCCUAagcGGCCcgcggCCGCCc -3'
miRNA:   3'- aCGGCCCGAGgGGAU---CCGGa----GGUGGc -5'
31269 5' -64.7 NC_006560.1 + 144400 0.77 0.108611
Target:  5'- cGgCGGGC-CCCCcGGGCCUCCGCg- -3'
miRNA:   3'- aCgGCCCGaGGGGaUCCGGAGGUGgc -5'
31269 5' -64.7 NC_006560.1 + 145057 0.76 0.116724
Target:  5'- cGCCGGGCggccuccUCCCCUgggcggggccGGGCCUCCcgaGCCc -3'
miRNA:   3'- aCGGCCCG-------AGGGGA----------UCCGGAGG---UGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.