miRNA display CGI


Results 21 - 40 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31269 5' -64.7 NC_006560.1 + 54054 0.66 0.4937
Target:  5'- gGCUgGGGCgacucgccccucuucUCCCCgcccccGGCCgCCGCCGg -3'
miRNA:   3'- aCGG-CCCG---------------AGGGGau----CCGGaGGUGGC- -5'
31269 5' -64.7 NC_006560.1 + 145496 0.66 0.49007
Target:  5'- cUGCgggGGGCucugUCCCCUgcucucccgggcGGGCCUCgACCc -3'
miRNA:   3'- -ACGg--CCCG----AGGGGA------------UCCGGAGgUGGc -5'
31269 5' -64.7 NC_006560.1 + 105659 0.66 0.49007
Target:  5'- cGaCCGGGa-CCCCgGGGCCuacUCCGuCCGg -3'
miRNA:   3'- aC-GGCCCgaGGGGaUCCGG---AGGU-GGC- -5'
31269 5' -64.7 NC_006560.1 + 118286 0.66 0.49007
Target:  5'- cGuCCGGGCUCcgccagggcgCCCUggcgcaccAGGCggCCGCCGu -3'
miRNA:   3'- aC-GGCCCGAG----------GGGA--------UCCGgaGGUGGC- -5'
31269 5' -64.7 NC_006560.1 + 73247 0.66 0.49007
Target:  5'- cGCCGucGGCgacUUCCU-GGCCUCCACgCGc -3'
miRNA:   3'- aCGGC--CCGa--GGGGAuCCGGAGGUG-GC- -5'
31269 5' -64.7 NC_006560.1 + 14905 0.66 0.49007
Target:  5'- gGUCGGGg-CCCCUGGGgaaUCUCguCCGg -3'
miRNA:   3'- aCGGCCCgaGGGGAUCC---GGAGguGGC- -5'
31269 5' -64.7 NC_006560.1 + 20102 0.66 0.49007
Target:  5'- aGaCCGGGUUCCCCU-GGaCUCCGg-- -3'
miRNA:   3'- aC-GGCCCGAGGGGAuCCgGAGGUggc -5'
31269 5' -64.7 NC_006560.1 + 64460 0.66 0.49007
Target:  5'- aGCU-GGCUCUCgUGGGCgcgcagccgCUCCACCa -3'
miRNA:   3'- aCGGcCCGAGGGgAUCCG---------GAGGUGGc -5'
31269 5' -64.7 NC_006560.1 + 121726 0.66 0.49007
Target:  5'- cGgCGGGCagCCCggcggGGGCgUCCGCgGc -3'
miRNA:   3'- aCgGCCCGagGGGa----UCCGgAGGUGgC- -5'
31269 5' -64.7 NC_006560.1 + 23752 0.66 0.49007
Target:  5'- cGCCGuGCgCgCCgUGGGCCUCguCGCCGg -3'
miRNA:   3'- aCGGCcCGaG-GGgAUCCGGAG--GUGGC- -5'
31269 5' -64.7 NC_006560.1 + 27843 0.66 0.481048
Target:  5'- gUGCCGGGggUgCCggGGGUCUcCCGCCc -3'
miRNA:   3'- -ACGGCCCgaGgGGa-UCCGGA-GGUGGc -5'
31269 5' -64.7 NC_006560.1 + 138507 0.66 0.481048
Target:  5'- gGCCgGGGCgccgCCCCgucuGCCcCCACCc -3'
miRNA:   3'- aCGG-CCCGa---GGGGauc-CGGaGGUGGc -5'
31269 5' -64.7 NC_006560.1 + 105243 0.66 0.481048
Target:  5'- cUGCCgcugGGGCUCCUCg----CUCCGCCGg -3'
miRNA:   3'- -ACGG----CCCGAGGGGauccgGAGGUGGC- -5'
31269 5' -64.7 NC_006560.1 + 980 0.66 0.481048
Target:  5'- cGCCcggGGGCgcgCCCCUcgccccggccgGGGCgccguCUCCGCCc -3'
miRNA:   3'- aCGG---CCCGa--GGGGA-----------UCCG-----GAGGUGGc -5'
31269 5' -64.7 NC_006560.1 + 142977 0.67 0.472108
Target:  5'- cGCCGcGGCgagcgaCCCCc-GGCCcgagagagCCACCGa -3'
miRNA:   3'- aCGGC-CCGa-----GGGGauCCGGa-------GGUGGC- -5'
31269 5' -64.7 NC_006560.1 + 131406 0.67 0.472108
Target:  5'- gGCCGcGGaCgcgcgCCCCUGGGCCcggGCCGu -3'
miRNA:   3'- aCGGC-CC-Ga----GGGGAUCCGGaggUGGC- -5'
31269 5' -64.7 NC_006560.1 + 35606 0.67 0.472108
Target:  5'- cUGCCGGGaaucCUCCgcgCCgcGGCC-CCGCCc -3'
miRNA:   3'- -ACGGCCC----GAGG---GGauCCGGaGGUGGc -5'
31269 5' -64.7 NC_006560.1 + 22048 0.67 0.472108
Target:  5'- cGCCGGa---CCCggagGGGCCgCCGCCGu -3'
miRNA:   3'- aCGGCCcgagGGGa---UCCGGaGGUGGC- -5'
31269 5' -64.7 NC_006560.1 + 36207 0.67 0.472108
Target:  5'- gGCCGGGgUCCagcGGGCC-CCACg- -3'
miRNA:   3'- aCGGCCCgAGGggaUCCGGaGGUGgc -5'
31269 5' -64.7 NC_006560.1 + 6835 0.67 0.472108
Target:  5'- gGaCCggGGGCUCaCCUcGGCCUCUGCCc -3'
miRNA:   3'- aC-GG--CCCGAGgGGAuCCGGAGGUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.