Results 1 - 12 of 12 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3127 | 5' | -52.2 | NC_001493.1 | + | 6528 | 1.09 | 0.005546 |
Target: 5'- gCCUACCAUGAAGGCCUCACGAGGUUAu -3' miRNA: 3'- -GGAUGGUACUUCCGGAGUGCUCCAAU- -5' |
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3127 | 5' | -52.2 | NC_001493.1 | + | 6646 | 1.09 | 0.005546 |
Target: 5'- gCCUACCAUGAAGGCCUCACGAGGUUAu -3' miRNA: 3'- -GGAUGGUACUUCCGGAGUGCUCCAAU- -5' |
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3127 | 5' | -52.2 | NC_001493.1 | + | 14334 | 0.68 | 0.916658 |
Target: 5'- gCU-CguUGAGGGCCagggUCACGAGGUc- -3' miRNA: 3'- gGAuGguACUUCCGG----AGUGCUCCAau -5' |
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3127 | 5' | -52.2 | NC_001493.1 | + | 36215 | 0.68 | 0.922518 |
Target: 5'- -gUACCggGgcGGCCUgCGCGGGGg-- -3' miRNA: 3'- ggAUGGuaCuuCCGGA-GUGCUCCaau -5' |
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3127 | 5' | -52.2 | NC_001493.1 | + | 37432 | 0.68 | 0.933463 |
Target: 5'- cCCU-CgAUGu-GGCCUCaACGAGGUg- -3' miRNA: 3'- -GGAuGgUACuuCCGGAG-UGCUCCAau -5' |
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3127 | 5' | -52.2 | NC_001493.1 | + | 55734 | 0.7 | 0.844449 |
Target: 5'- -aUGCCAUGAAGGCCacCAUaGAGGa-- -3' miRNA: 3'- ggAUGGUACUUCCGGa-GUG-CUCCaau -5' |
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3127 | 5' | -52.2 | NC_001493.1 | + | 60080 | 0.66 | 0.967138 |
Target: 5'- aCCggugACCGUGAcGGgUUgGCGAGGUc- -3' miRNA: 3'- -GGa---UGGUACUuCCgGAgUGCUCCAau -5' |
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3127 | 5' | -52.2 | NC_001493.1 | + | 74227 | 0.66 | 0.975887 |
Target: 5'- --cGCCAUGAaguucAGGUUugUCACGAGGa-- -3' miRNA: 3'- ggaUGGUACU-----UCCGG--AGUGCUCCaau -5' |
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3127 | 5' | -52.2 | NC_001493.1 | + | 93219 | 0.73 | 0.690097 |
Target: 5'- gCUGCgAUGAAGGCCUCuACGAaGUa- -3' miRNA: 3'- gGAUGgUACUUCCGGAG-UGCUcCAau -5' |
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3127 | 5' | -52.2 | NC_001493.1 | + | 122082 | 1.09 | 0.005546 |
Target: 5'- gCCUACCAUGAAGGCCUCACGAGGUUAu -3' miRNA: 3'- -GGAUGGUACUUCCGGAGUGCUCCAAU- -5' |
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3127 | 5' | -52.2 | NC_001493.1 | + | 122200 | 1.09 | 0.005546 |
Target: 5'- gCCUACCAUGAAGGCCUCACGAGGUUAu -3' miRNA: 3'- -GGAUGGUACUUCCGGAGUGCUCCAAU- -5' |
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3127 | 5' | -52.2 | NC_001493.1 | + | 129888 | 0.68 | 0.916658 |
Target: 5'- gCU-CguUGAGGGCCagggUCACGAGGUc- -3' miRNA: 3'- gGAuGguACUUCCGG----AGUGCUCCAau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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