miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3128 5' -56.3 NC_001493.1 + 91702 0.66 0.875239
Target:  5'- ----cCAAuCGGGgGCCCgaGGGGGGAGc -3'
miRNA:   3'- cuaaaGUU-GCCUgCGGGg-CCCUCCUU- -5'
3128 5' -56.3 NC_001493.1 + 63925 0.66 0.875239
Target:  5'- ---aUCGGC-GACGCCCgCGGGAGc-- -3'
miRNA:   3'- cuaaAGUUGcCUGCGGG-GCCCUCcuu -5'
3128 5' -56.3 NC_001493.1 + 86818 0.66 0.852293
Target:  5'- cGUUUCAucGCGGGCGCCgaCgGGGAGu-- -3'
miRNA:   3'- cUAAAGU--UGCCUGCGG--GgCCCUCcuu -5'
3128 5' -56.3 NC_001493.1 + 74974 0.66 0.852293
Target:  5'- ----aCAGCGGGCGCCCCGcugcugcaAGGGg -3'
miRNA:   3'- cuaaaGUUGCCUGCGGGGCcc------UCCUu -5'
3128 5' -56.3 NC_001493.1 + 87721 0.67 0.827506
Target:  5'- ------cAUGaGCGCCCCGGGAGGu- -3'
miRNA:   3'- cuaaaguUGCcUGCGGGGCCCUCCuu -5'
3128 5' -56.3 NC_001493.1 + 32028 0.67 0.82665
Target:  5'- aGAgaUCAACGGugccaccGCGCUCUGGGAuaGGAc -3'
miRNA:   3'- -CUaaAGUUGCC-------UGCGGGGCCCU--CCUu -5'
3128 5' -56.3 NC_001493.1 + 109681 0.67 0.818867
Target:  5'- ---gUCAACGGucacauCGCCCCGGGcgcgcucgAGGc- -3'
miRNA:   3'- cuaaAGUUGCCu-----GCGGGGCCC--------UCCuu -5'
3128 5' -56.3 NC_001493.1 + 123395 0.67 0.810055
Target:  5'- ----aCGAuCGGGuuCCCCGGGGGGAGg -3'
miRNA:   3'- cuaaaGUU-GCCUgcGGGGCCCUCCUU- -5'
3128 5' -56.3 NC_001493.1 + 7841 0.67 0.810055
Target:  5'- ----aCGAuCGGGuuCCCCGGGGGGAGg -3'
miRNA:   3'- cuaaaGUU-GCCUgcGGGGCCCUCCUU- -5'
3128 5' -56.3 NC_001493.1 + 87783 0.68 0.773237
Target:  5'- ---cUCcuCGuACGCCCCGGGGGGc- -3'
miRNA:   3'- cuaaAGuuGCcUGCGGGGCCCUCCuu -5'
3128 5' -56.3 NC_001493.1 + 131085 0.68 0.754015
Target:  5'- ---aUCGAaGGugGCCCC-GGAGGGu -3'
miRNA:   3'- cuaaAGUUgCCugCGGGGcCCUCCUu -5'
3128 5' -56.3 NC_001493.1 + 15531 0.68 0.754015
Target:  5'- ---aUCGAaGGugGCCCC-GGAGGGu -3'
miRNA:   3'- cuaaAGUUgCCugCGGGGcCCUCCUu -5'
3128 5' -56.3 NC_001493.1 + 87824 0.68 0.744233
Target:  5'- ---gUCcuCGuACGCCCCGGGGGGu- -3'
miRNA:   3'- cuaaAGuuGCcUGCGGGGCCCUCCuu -5'
3128 5' -56.3 NC_001493.1 + 14923 0.68 0.73435
Target:  5'- ----cCGGCGGucCGCCCCaugggggcaGGGGGGAAg -3'
miRNA:   3'- cuaaaGUUGCCu-GCGGGG---------CCCUCCUU- -5'
3128 5' -56.3 NC_001493.1 + 130477 0.68 0.73435
Target:  5'- ----cCGGCGGucCGCCCCaugggggcaGGGGGGAAg -3'
miRNA:   3'- cuaaaGUUGCCu-GCGGGG---------CCCUCCUU- -5'
3128 5' -56.3 NC_001493.1 + 92203 0.69 0.694005
Target:  5'- ----aCGACGGAU-CCCgGGGAGGGGa -3'
miRNA:   3'- cuaaaGUUGCCUGcGGGgCCCUCCUU- -5'
3128 5' -56.3 NC_001493.1 + 69467 0.7 0.621699
Target:  5'- ----aCAGCGGucuguGCGaCCUCGGGAGGAu -3'
miRNA:   3'- cuaaaGUUGCC-----UGC-GGGGCCCUCCUu -5'
3128 5' -56.3 NC_001493.1 + 80887 0.71 0.6103
Target:  5'- ---aUCAuCGGugGCCCacuuauuCGGGGGGAGu -3'
miRNA:   3'- cuaaAGUuGCCugCGGG-------GCCCUCCUU- -5'
3128 5' -56.3 NC_001493.1 + 12916 0.71 0.590663
Target:  5'- -----gGACGGGa-CCCCGGGAGGAc -3'
miRNA:   3'- cuaaagUUGCCUgcGGGGCCCUCCUu -5'
3128 5' -56.3 NC_001493.1 + 128470 0.71 0.590663
Target:  5'- -----gGACGGGa-CCCCGGGAGGAc -3'
miRNA:   3'- cuaaagUUGCCUgcGGGGCCCUCCUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.