miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31283 5' -41.1 NC_006565.1 + 8819 0.68 1
Target:  5'- -aCCAaacucUUUAGCUAGAUcUUUAAuAGCCu -3'
miRNA:   3'- caGGU-----AAGUUGAUCUGaAAAUU-UCGG- -5'
31283 5' -41.1 NC_006565.1 + 98941 0.67 1
Target:  5'- -gCUAUUCAGaagauuagucuCUAGGCUUUUAcAGUCu -3'
miRNA:   3'- caGGUAAGUU-----------GAUCUGAAAAUuUCGG- -5'
31283 5' -41.1 NC_006565.1 + 84190 0.66 1
Target:  5'- uUCUAuUUUAGCUAGuucACUgauaUUAGGGCCg -3'
miRNA:   3'- cAGGU-AAGUUGAUC---UGAa---AAUUUCGG- -5'
31283 5' -41.1 NC_006565.1 + 38246 0.67 1
Target:  5'- uUCCAaaggcagcuacuagUUCAGCUaguucAGACga-UAAGGCCu -3'
miRNA:   3'- cAGGU--------------AAGUUGA-----UCUGaaaAUUUCGG- -5'
31283 5' -41.1 NC_006565.1 + 65372 0.66 1
Target:  5'- cGUCagGUUCAGCUAGAUUuaaUUUAAucuuaaauucuGGCUa -3'
miRNA:   3'- -CAGg-UAAGUUGAUCUGA---AAAUU-----------UCGG- -5'
31283 5' -41.1 NC_006565.1 + 109567 0.71 0.999993
Target:  5'- cUCCucgUCAGCUAucuguuGACUgg-GAGGCCu -3'
miRNA:   3'- cAGGua-AGUUGAU------CUGAaaaUUUCGG- -5'
31283 5' -41.1 NC_006565.1 + 131245 0.72 0.999959
Target:  5'- aUCCAU--GACUggcGGGCgUUUAAAGCCa -3'
miRNA:   3'- cAGGUAagUUGA---UCUGaAAAUUUCGG- -5'
31283 5' -41.1 NC_006565.1 + 2412 0.74 0.999614
Target:  5'- aUCCGUgguacUAGCUAGGCgUUUAAAGUCu -3'
miRNA:   3'- cAGGUAa----GUUGAUCUGaAAAUUUCGG- -5'
31283 5' -41.1 NC_006565.1 + 2458 0.74 0.999377
Target:  5'- aUCCGUgguacUAGCUAGGCUUUaAAAGUCu -3'
miRNA:   3'- cAGGUAa----GUUGAUCUGAAAaUUUCGG- -5'
31283 5' -41.1 NC_006565.1 + 2238 0.96 0.34314
Target:  5'- aGUCCAUUCAACUAGACUUUaAAcGCCu -3'
miRNA:   3'- -CAGGUAAGUUGAUCUGAAAaUUuCGG- -5'
31283 5' -41.1 NC_006565.1 + 2284 1.16 0.033274
Target:  5'- aGUCCAUUCAACUAGACUUUUAAAGCCu -3'
miRNA:   3'- -CAGGUAAGUUGAUCUGAAAAUUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.