miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3129 3' -54.9 NC_001493.1 + 133040 0.67 0.89836
Target:  5'- uUGAgGACGUGG--GCCCGGuACCcgUCc -3'
miRNA:   3'- gACUaCUGCACCugUGGGCC-UGGa-AG- -5'
3129 3' -54.9 NC_001493.1 + 17486 0.67 0.89836
Target:  5'- uUGAgGACGUGG--GCCCGGuACCcgUCc -3'
miRNA:   3'- gACUaCUGCACCugUGGGCC-UGGa-AG- -5'
3129 3' -54.9 NC_001493.1 + 63744 0.67 0.89836
Target:  5'- -cGGUGugGUGGuCACCgCGGugUc-- -3'
miRNA:   3'- gaCUACugCACCuGUGG-GCCugGaag -5'
3129 3' -54.9 NC_001493.1 + 16162 0.67 0.889654
Target:  5'- uUGAUGGCGcGGAgACcuuccccgcacucaCCGaGACCUUCc -3'
miRNA:   3'- gACUACUGCaCCUgUG--------------GGC-CUGGAAG- -5'
3129 3' -54.9 NC_001493.1 + 64336 0.67 0.884804
Target:  5'- -aGGUGACGcGGugACCgGGACg--- -3'
miRNA:   3'- gaCUACUGCaCCugUGGgCCUGgaag -5'
3129 3' -54.9 NC_001493.1 + 131717 0.67 0.884102
Target:  5'- uUGAUGGCGcGGAgACCuucccgcacucacCGaGACCUUCc -3'
miRNA:   3'- gACUACUGCaCCUgUGG-------------GC-CUGGAAG- -5'
3129 3' -54.9 NC_001493.1 + 110806 0.68 0.854985
Target:  5'- gUGGUGAUaUGGccGgGCCCGGcCCUUCc -3'
miRNA:   3'- gACUACUGcACC--UgUGGGCCuGGAAG- -5'
3129 3' -54.9 NC_001493.1 + 63789 0.68 0.854985
Target:  5'- -cGAUGugGUGGuCACCgCGGugUc-- -3'
miRNA:   3'- gaCUACugCACCuGUGG-GCCugGaag -5'
3129 3' -54.9 NC_001493.1 + 30919 0.68 0.846998
Target:  5'- ----cGGCGUGGACcguCCCGGugCg-- -3'
miRNA:   3'- gacuaCUGCACCUGu--GGGCCugGaag -5'
3129 3' -54.9 NC_001493.1 + 42065 0.69 0.821002
Target:  5'- gUGAUaggGGCGgccccgGGACGugcccccugugucUCCGGACCUUCg -3'
miRNA:   3'- gACUA---CUGCa-----CCUGU-------------GGGCCUGGAAG- -5'
3129 3' -54.9 NC_001493.1 + 63507 0.69 0.813128
Target:  5'- -cGGUGugGUGGuCACCaCGGugUcggUCg -3'
miRNA:   3'- gaCUACugCACCuGUGG-GCCugGa--AG- -5'
3129 3' -54.9 NC_001493.1 + 63384 0.69 0.813128
Target:  5'- -cGGUGugGUGGuCACCaCGGugUcggUCg -3'
miRNA:   3'- gaCUACugCACCuGUGG-GCCugGa--AG- -5'
3129 3' -54.9 NC_001493.1 + 63303 0.69 0.813128
Target:  5'- -cGGUGugGUGGuCACCaCGGugUcggUCg -3'
miRNA:   3'- gaCUACugCACCuGUGG-GCCugGa--AG- -5'
3129 3' -54.9 NC_001493.1 + 63258 0.69 0.813128
Target:  5'- -cGGUGugGUGGuCACCaCGGugUcggUCg -3'
miRNA:   3'- gaCUACugCACCuGUGG-GCCugGa--AG- -5'
3129 3' -54.9 NC_001493.1 + 63213 0.69 0.813128
Target:  5'- -cGGUGugGUGGuCACCaCGGugUcggUCg -3'
miRNA:   3'- gaCUACugCACCuGUGG-GCCugGa--AG- -5'
3129 3' -54.9 NC_001493.1 + 63168 0.69 0.813128
Target:  5'- -cGGUGugGUGGuCACCaCGGugUcggUCg -3'
miRNA:   3'- gaCUACugCACCuGUGG-GCCugGa--AG- -5'
3129 3' -54.9 NC_001493.1 + 73308 0.7 0.767078
Target:  5'- ----cGGCGUGGAcCAUCCGGuCCUUg -3'
miRNA:   3'- gacuaCUGCACCU-GUGGGCCuGGAAg -5'
3129 3' -54.9 NC_001493.1 + 63687 0.7 0.747732
Target:  5'- -cGGUGugGUGGuCACCaCGGugUcgUUCg -3'
miRNA:   3'- gaCUACugCACCuGUGG-GCCugG--AAG- -5'
3129 3' -54.9 NC_001493.1 + 24364 0.7 0.737898
Target:  5'- -cGGUGACGcgcugugGGAUugguACCCGGGCCUc- -3'
miRNA:   3'- gaCUACUGCa------CCUG----UGGGCCUGGAag -5'
3129 3' -54.9 NC_001493.1 + 87001 0.71 0.67725
Target:  5'- aCUGGUGGCGU-GACGaCCGGACCc-- -3'
miRNA:   3'- -GACUACUGCAcCUGUgGGCCUGGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.