Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3129 | 5' | -64.8 | NC_001493.1 | + | 8433 | 1.08 | 0.00058 |
Target: 5'- gCUGUGGACCCGGGCACCCCCCCGUCGa -3' miRNA: 3'- -GACACCUGGGCCCGUGGGGGGGCAGC- -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 123987 | 1.08 | 0.00058 |
Target: 5'- gCUGUGGACCCGGGCACCCCCCCGUCGa -3' miRNA: 3'- -GACACCUGGGCCCGUGGGGGGGCAGC- -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 30420 | 0.76 | 0.123615 |
Target: 5'- --uUGGACCCGGGCACCuuuCCUCCGaUCa -3' miRNA: 3'- gacACCUGGGCCCGUGG---GGGGGC-AGc -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 107418 | 0.76 | 0.129818 |
Target: 5'- gUGUGGAuUCCGGcCACCCCCCCGggacCGg -3' miRNA: 3'- gACACCU-GGGCCcGUGGGGGGGCa---GC- -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 106545 | 0.75 | 0.132702 |
Target: 5'- -gGUGGgaaauacGCCCGGGUcCCCCCCgCGUCa -3' miRNA: 3'- gaCACC-------UGGGCCCGuGGGGGG-GCAGc -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 26380 | 0.71 | 0.269068 |
Target: 5'- ---cGGGCCCGGGUuucgGCCCCagCCCGgUCGu -3' miRNA: 3'- gacaCCUGGGCCCG----UGGGG--GGGC-AGC- -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 91691 | 0.7 | 0.287576 |
Target: 5'- --uUGGGCgCCGGGU-CCCCCCCGa-- -3' miRNA: 3'- gacACCUG-GGCCCGuGGGGGGGCagc -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 30999 | 0.7 | 0.313791 |
Target: 5'- cCUGaagcUGGACCUGGuGCuCCCCccgaccaccggCCCGUCGa -3' miRNA: 3'- -GAC----ACCUGGGCC-CGuGGGG-----------GGGCAGC- -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 132256 | 0.69 | 0.327562 |
Target: 5'- ---cGGGCCUcucgcccugGGGCACCCUCCCGgUCc -3' miRNA: 3'- gacaCCUGGG---------CCCGUGGGGGGGC-AGc -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 91615 | 0.69 | 0.363919 |
Target: 5'- ---cGGuCgCGGGCGCaCCCUCCGUCu -3' miRNA: 3'- gacaCCuGgGCCCGUG-GGGGGGCAGc -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 106700 | 0.68 | 0.379224 |
Target: 5'- ---gGGACCCGGGCGuauuUCCCaCCCGa-- -3' miRNA: 3'- gacaCCUGGGCCCGU----GGGG-GGGCagc -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 103249 | 0.68 | 0.387037 |
Target: 5'- gUGUGcGGCCUGGaUAUCCCCCCGg-- -3' miRNA: 3'- gACAC-CUGGGCCcGUGGGGGGGCagc -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 95642 | 0.68 | 0.394158 |
Target: 5'- -cGUGGACaCCGGaGCgguuacaggaggaGCCaCCCCCGaCGa -3' miRNA: 3'- gaCACCUG-GGCC-CG-------------UGG-GGGGGCaGC- -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 17435 | 0.68 | 0.394955 |
Target: 5'- ---aGGGUgCGGGCACCCCCUCugagGUCGa -3' miRNA: 3'- gacaCCUGgGCCCGUGGGGGGG----CAGC- -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 132989 | 0.68 | 0.394955 |
Target: 5'- ---aGGGUgCGGGCACCCCCUCugagGUCGa -3' miRNA: 3'- gacaCCUGgGCCCGUGGGGGGG----CAGC- -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 48113 | 0.68 | 0.402977 |
Target: 5'- -cGUGGAgggcCUCGGcGCACCCgaCCCCGUa- -3' miRNA: 3'- gaCACCU----GGGCC-CGUGGG--GGGGCAgc -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 133141 | 0.68 | 0.410284 |
Target: 5'- --cUGGAacacgauCCCGGGCACgCCCgCGUUGc -3' miRNA: 3'- gacACCU-------GGGCCCGUGgGGGgGCAGC- -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 17587 | 0.68 | 0.410284 |
Target: 5'- --cUGGAacacgauCCCGGGCACgCCCgCGUUGc -3' miRNA: 3'- gacACCU-------GGGCCCGUGgGGGgGCAGC- -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 133047 | 0.68 | 0.411101 |
Target: 5'- -cGUGGGCCC-GGUACCCguCCCCcUUGa -3' miRNA: 3'- gaCACCUGGGcCCGUGGG--GGGGcAGC- -5' |
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3129 | 5' | -64.8 | NC_001493.1 | + | 17493 | 0.68 | 0.411101 |
Target: 5'- -cGUGGGCCC-GGUACCCguCCCCcUUGa -3' miRNA: 3'- gaCACCUGGGcCCGUGGG--GGGGcAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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