miRNA display CGI


Results 21 - 35 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3129 5' -64.8 NC_001493.1 + 132989 0.68 0.394955
Target:  5'- ---aGGGUgCGGGCACCCCCUCugagGUCGa -3'
miRNA:   3'- gacaCCUGgGCCCGUGGGGGGG----CAGC- -5'
3129 5' -64.8 NC_001493.1 + 17435 0.68 0.394955
Target:  5'- ---aGGGUgCGGGCACCCCCUCugagGUCGa -3'
miRNA:   3'- gacaCCUGgGCCCGUGGGGGGG----CAGC- -5'
3129 5' -64.8 NC_001493.1 + 95642 0.68 0.394158
Target:  5'- -cGUGGACaCCGGaGCgguuacaggaggaGCCaCCCCCGaCGa -3'
miRNA:   3'- gaCACCUG-GGCC-CG-------------UGG-GGGGGCaGC- -5'
3129 5' -64.8 NC_001493.1 + 103249 0.68 0.387037
Target:  5'- gUGUGcGGCCUGGaUAUCCCCCCGg-- -3'
miRNA:   3'- gACAC-CUGGGCCcGUGGGGGGGCagc -5'
3129 5' -64.8 NC_001493.1 + 106700 0.68 0.379224
Target:  5'- ---gGGACCCGGGCGuauuUCCCaCCCGa-- -3'
miRNA:   3'- gacaCCUGGGCCCGU----GGGG-GGGCagc -5'
3129 5' -64.8 NC_001493.1 + 91615 0.69 0.363919
Target:  5'- ---cGGuCgCGGGCGCaCCCUCCGUCu -3'
miRNA:   3'- gacaCCuGgGCCCGUG-GGGGGGCAGc -5'
3129 5' -64.8 NC_001493.1 + 132256 0.69 0.327562
Target:  5'- ---cGGGCCUcucgcccugGGGCACCCUCCCGgUCc -3'
miRNA:   3'- gacaCCUGGG---------CCCGUGGGGGGGC-AGc -5'
3129 5' -64.8 NC_001493.1 + 30999 0.7 0.313791
Target:  5'- cCUGaagcUGGACCUGGuGCuCCCCccgaccaccggCCCGUCGa -3'
miRNA:   3'- -GAC----ACCUGGGCC-CGuGGGG-----------GGGCAGC- -5'
3129 5' -64.8 NC_001493.1 + 91691 0.7 0.287576
Target:  5'- --uUGGGCgCCGGGU-CCCCCCCGa-- -3'
miRNA:   3'- gacACCUG-GGCCCGuGGGGGGGCagc -5'
3129 5' -64.8 NC_001493.1 + 26380 0.71 0.269068
Target:  5'- ---cGGGCCCGGGUuucgGCCCCagCCCGgUCGu -3'
miRNA:   3'- gacaCCUGGGCCCG----UGGGG--GGGC-AGC- -5'
3129 5' -64.8 NC_001493.1 + 106545 0.75 0.132702
Target:  5'- -gGUGGgaaauacGCCCGGGUcCCCCCCgCGUCa -3'
miRNA:   3'- gaCACC-------UGGGCCCGuGGGGGG-GCAGc -5'
3129 5' -64.8 NC_001493.1 + 107418 0.76 0.129818
Target:  5'- gUGUGGAuUCCGGcCACCCCCCCGggacCGg -3'
miRNA:   3'- gACACCU-GGGCCcGUGGGGGGGCa---GC- -5'
3129 5' -64.8 NC_001493.1 + 30420 0.76 0.123615
Target:  5'- --uUGGACCCGGGCACCuuuCCUCCGaUCa -3'
miRNA:   3'- gacACCUGGGCCCGUGG---GGGGGC-AGc -5'
3129 5' -64.8 NC_001493.1 + 123987 1.08 0.00058
Target:  5'- gCUGUGGACCCGGGCACCCCCCCGUCGa -3'
miRNA:   3'- -GACACCUGGGCCCGUGGGGGGGCAGC- -5'
3129 5' -64.8 NC_001493.1 + 8433 1.08 0.00058
Target:  5'- gCUGUGGACCCGGGCACCCCCCCGUCGa -3'
miRNA:   3'- -GACACCUGGGCCCGUGGGGGGGCAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.