miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31298 5' -49.4 NC_006623.1 + 105726 0.66 0.998376
Target:  5'- cCCCA--CAUgUUCCCAAUCc-UCUCCa -3'
miRNA:   3'- aGGGUuaGUA-AGGGGUUAGucAGAGG- -5'
31298 5' -49.4 NC_006623.1 + 14862 0.66 0.997665
Target:  5'- gUCCCAAUCccaUCCCCAuaugcuuuguUUGGUCUa- -3'
miRNA:   3'- -AGGGUUAGua-AGGGGUu---------AGUCAGAgg -5'
31298 5' -49.4 NC_006623.1 + 20898 0.66 0.997222
Target:  5'- cCCCAGauUCuacUUCCUCGAUgaAGUCUUCg -3'
miRNA:   3'- aGGGUU--AGu--AAGGGGUUAg-UCAGAGG- -5'
31298 5' -49.4 NC_006623.1 + 59145 0.67 0.993838
Target:  5'- -aUCAuauAUCGUUUCCCAAUC-GUCUgCCg -3'
miRNA:   3'- agGGU---UAGUAAGGGGUUAGuCAGA-GG- -5'
31298 5' -49.4 NC_006623.1 + 130413 0.67 0.993838
Target:  5'- -gCCAAUUAUUCgCCGG-CGGaCUCCg -3'
miRNA:   3'- agGGUUAGUAAGgGGUUaGUCaGAGG- -5'
31298 5' -49.4 NC_006623.1 + 28045 0.68 0.991784
Target:  5'- cCCCAAUCGccUUCCCaGAagAGUUUCUc -3'
miRNA:   3'- aGGGUUAGU--AAGGGgUUagUCAGAGG- -5'
31298 5' -49.4 NC_006623.1 + 145335 0.68 0.989223
Target:  5'- gCCCuguuUCAUUcuaCCCCAGUCAGccCUaCCa -3'
miRNA:   3'- aGGGuu--AGUAA---GGGGUUAGUCa-GA-GG- -5'
31298 5' -49.4 NC_006623.1 + 116277 0.68 0.989223
Target:  5'- gCCCuguuUCAUUcuaCCCCAGUCAGccCUaCCa -3'
miRNA:   3'- aGGGuu--AGUAA---GGGGUUAGUCa-GA-GG- -5'
31298 5' -49.4 NC_006623.1 + 77640 0.69 0.986079
Target:  5'- uUUUCAGUUuugCUCC-AUCAGUCUCCc -3'
miRNA:   3'- -AGGGUUAGuaaGGGGuUAGUCAGAGG- -5'
31298 5' -49.4 NC_006623.1 + 6714 0.69 0.986079
Target:  5'- --aCAAUCAagcuuUUCCCCAucacCAGUCUCa -3'
miRNA:   3'- aggGUUAGU-----AAGGGGUua--GUCAGAGg -5'
31298 5' -49.4 NC_006623.1 + 101884 0.69 0.982275
Target:  5'- uUCCCAAacaaccauaCAUUCCCCAAgcucccCAGUauUUCCa -3'
miRNA:   3'- -AGGGUUa--------GUAAGGGGUUa-----GUCA--GAGG- -5'
31298 5' -49.4 NC_006623.1 + 7722 0.7 0.972398
Target:  5'- aCCCGA----UCCCCAGcaaguuccCGGUCUCCa -3'
miRNA:   3'- aGGGUUaguaAGGGGUUa-------GUCAGAGG- -5'
31298 5' -49.4 NC_006623.1 + 27957 0.71 0.946527
Target:  5'- aUCCCuGUCucUCCCCGAUgCGcUCUCCc -3'
miRNA:   3'- -AGGGuUAGuaAGGGGUUA-GUcAGAGG- -5'
31298 5' -49.4 NC_006623.1 + 565 0.72 0.914531
Target:  5'- -gCCAAUucCAUUCCUCuuUCuGUCUCCa -3'
miRNA:   3'- agGGUUA--GUAAGGGGuuAGuCAGAGG- -5'
31298 5' -49.4 NC_006623.1 + 146907 0.75 0.796066
Target:  5'- uUCCCAuuAUCAcacUCCCCGcaAUCGGUCcCCa -3'
miRNA:   3'- -AGGGU--UAGUa--AGGGGU--UAGUCAGaGG- -5'
31298 5' -49.4 NC_006623.1 + 114705 0.75 0.796066
Target:  5'- uUCCCAuuAUCAcacUCCCCGcaAUCGGUCcCCa -3'
miRNA:   3'- -AGGGU--UAGUa--AGGGGU--UAGUCAGaGG- -5'
31298 5' -49.4 NC_006623.1 + 855 0.77 0.695379
Target:  5'- gUCCCAacacggcaGUCAUUCCCaucUgAGUCUCCg -3'
miRNA:   3'- -AGGGU--------UAGUAAGGGguuAgUCAGAGG- -5'
31298 5' -49.4 NC_006623.1 + 706 1.14 0.006495
Target:  5'- uUCCCAAUCAUUCCCCAAUCAGUCUCCu -3'
miRNA:   3'- -AGGGUUAGUAAGGGGUUAGUCAGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.