miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31299 3' -50.6 NC_006623.1 + 1198 0.66 0.994213
Target:  5'- aUCGGAgaGAGGGAauguggcagccgcucGGcgAGGAggGUGGggUGu -3'
miRNA:   3'- -AGCCU--CUCCCU---------------CUa-UCCU--UACCuuAC- -5'
31299 3' -50.6 NC_006623.1 + 137765 0.66 0.993859
Target:  5'- gUCGGAGuuaguuGGGGGGccgaacgGGGAGuUGGAAa- -3'
miRNA:   3'- -AGCCUCu-----CCCUCUa------UCCUU-ACCUUac -5'
31299 3' -50.6 NC_006623.1 + 123846 0.66 0.993859
Target:  5'- gUCGGAGuuaguuGGGGGGccgaacgGGGAGuUGGAAa- -3'
miRNA:   3'- -AGCCUCu-----CCCUCUa------UCCUU-ACCUUac -5'
31299 3' -50.6 NC_006623.1 + 105898 0.68 0.972643
Target:  5'- cUGGAGAGGauuGGGAacaugUGGGggUGGuGUGc -3'
miRNA:   3'- aGCCUCUCC---CUCU-----AUCCuuACCuUAC- -5'
31299 3' -50.6 NC_006623.1 + 8953 0.68 0.969685
Target:  5'- -gGuGAGGGGGGGGUAGGAuucaacgcGGAAa- -3'
miRNA:   3'- agC-CUCUCCCUCUAUCCUua------CCUUac -5'
31299 3' -50.6 NC_006623.1 + 112213 0.68 0.969685
Target:  5'- gCGGGGAGcacucaGGGGAcUGGGAggGGAcgGg -3'
miRNA:   3'- aGCCUCUC------CCUCU-AUCCUuaCCUuaC- -5'
31299 3' -50.6 NC_006623.1 + 139690 0.69 0.955578
Target:  5'- cCaGAGuAGGGGGGUGGGAG-GGAggGg -3'
miRNA:   3'- aGcCUC-UCCCUCUAUCCUUaCCUuaC- -5'
31299 3' -50.6 NC_006623.1 + 121922 0.69 0.955578
Target:  5'- cCaGAGuAGGGGGGUGGGAG-GGAggGg -3'
miRNA:   3'- aGcCUC-UCCCUCUAUCCUUaCCUuaC- -5'
31299 3' -50.6 NC_006623.1 + 110549 0.71 0.915458
Target:  5'- gUUGGcauGGAGGGGGAcAGGGcgGGAGg- -3'
miRNA:   3'- -AGCC---UCUCCCUCUaUCCUuaCCUUac -5'
31299 3' -50.6 NC_006623.1 + 138544 0.73 0.851041
Target:  5'- gCGGAGuGGGuGAgggGGGAgaGUGGAcgGa -3'
miRNA:   3'- aGCCUCuCCCuCUa--UCCU--UACCUuaC- -5'
31299 3' -50.6 NC_006623.1 + 123068 0.73 0.851041
Target:  5'- gCGGAGuGGGuGAgggGGGAgaGUGGAcgGa -3'
miRNA:   3'- aGCCUCuCCCuCUa--UCCU--UACCUuaC- -5'
31299 3' -50.6 NC_006623.1 + 1336 0.73 0.816579
Target:  5'- cUGaGGGGGGGAGGUGGGGG-GGAAg- -3'
miRNA:   3'- aGC-CUCUCCCUCUAUCCUUaCCUUac -5'
31299 3' -50.6 NC_006623.1 + 882 1.11 0.007124
Target:  5'- aUCGGAGAGGGAGAUAGGAAUGGAAUGg -3'
miRNA:   3'- -AGCCUCUCCCUCUAUCCUUACCUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.