miRNA display CGI


Results 21 - 40 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3130 5' -46.5 NC_001493.1 + 131464 0.66 0.999885
Target:  5'- aUCGUGaCCGAAGAg--GGACuccuggaucaGCCGUUCc -3'
miRNA:   3'- -AGCAC-GGCUUUUauaUUUG----------UGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 114958 0.66 0.999885
Target:  5'- -aGUGCUGAAGgcguaugcgGUGUAcGCAUCaCCCa -3'
miRNA:   3'- agCACGGCUUU---------UAUAUuUGUGGcGGG- -5'
3130 5' -46.5 NC_001493.1 + 94192 0.66 0.999865
Target:  5'- aCGUgGCCGAGGAuggguugcgggccauUAUuauGACAUUGUCCg -3'
miRNA:   3'- aGCA-CGGCUUUU---------------AUAu--UUGUGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 72871 0.66 0.99985
Target:  5'- cUCGUggGCCGGGAuggaGAGC-UCGCCCc -3'
miRNA:   3'- -AGCA--CGGCUUUuauaUUUGuGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 54857 0.66 0.99985
Target:  5'- cUGUGCCccGggGAgcgaGUGGugcgaGCCGCCCc -3'
miRNA:   3'- aGCACGG--CuuUUa---UAUUug---UGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 34627 0.67 0.999806
Target:  5'- aUC-UGUCGcuccAGAUAUAGACGgCCGUCCu -3'
miRNA:   3'- -AGcACGGCu---UUUAUAUUUGU-GGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 94948 0.67 0.999806
Target:  5'- cUCGgGCUGuuAAAUGacacgGAGCuCCGCCCg -3'
miRNA:   3'- -AGCaCGGCu-UUUAUa----UUUGuGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 32754 0.67 0.999806
Target:  5'- aCGUGCgCGggGGggucGUGAcccccgaguucuACACCGUCUu -3'
miRNA:   3'- aGCACG-GCuuUUa---UAUU------------UGUGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 100698 0.67 0.999806
Target:  5'- gCGUGCCGAGuAUAUGGcuuCACaGUUCa -3'
miRNA:   3'- aGCACGGCUUuUAUAUUu--GUGgCGGG- -5'
3130 5' -46.5 NC_001493.1 + 81995 0.67 0.999774
Target:  5'- cUCGUGCUGAAGAcauugAUAAccgaguuuguucgucGauuCCGCCCc -3'
miRNA:   3'- -AGCACGGCUUUUa----UAUU---------------Ugu-GGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 126824 0.67 0.99975
Target:  5'- cUCG-GUCu-GAGUGUGAGCGuCCGUCCc -3'
miRNA:   3'- -AGCaCGGcuUUUAUAUUUGU-GGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 84061 0.67 0.99975
Target:  5'- gCGgGCgGAGAAUuuaccgggGAGCGCCGCgCg -3'
miRNA:   3'- aGCaCGgCUUUUAua------UUUGUGGCGgG- -5'
3130 5' -46.5 NC_001493.1 + 100915 0.67 0.99975
Target:  5'- -gGUGUC--AGGUGU-GGCACCGUCCg -3'
miRNA:   3'- agCACGGcuUUUAUAuUUGUGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 11270 0.67 0.99975
Target:  5'- cUCG-GUCu-GAGUGUGAGCGuCCGUCCc -3'
miRNA:   3'- -AGCaCGGcuUUUAUAUUUGU-GGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 21261 0.67 0.999682
Target:  5'- -gGUGCCGAugucAUGGAC-CUGCUCc -3'
miRNA:   3'- agCACGGCUuuuaUAUUUGuGGCGGG- -5'
3130 5' -46.5 NC_001493.1 + 30920 0.67 0.999682
Target:  5'- cUCGUGCCGu--------ACACCGCg- -3'
miRNA:   3'- -AGCACGGCuuuuauauuUGUGGCGgg -5'
3130 5' -46.5 NC_001493.1 + 74517 0.67 0.999682
Target:  5'- aUCGUGCaCGAGAAcgcgAUGGAUcaagaccucaACUGCCa -3'
miRNA:   3'- -AGCACG-GCUUUUa---UAUUUG----------UGGCGGg -5'
3130 5' -46.5 NC_001493.1 + 93123 0.67 0.999682
Target:  5'- aUGUGCUGGAGGagAUGcaaGACACCGuuucgaCCCa -3'
miRNA:   3'- aGCACGGCUUUUa-UAU---UUGUGGC------GGG- -5'
3130 5' -46.5 NC_001493.1 + 31168 0.67 0.999658
Target:  5'- -gGU-CCGGAGGUAcugaccgaacaucuUGAAUACCGCCg -3'
miRNA:   3'- agCAcGGCUUUUAU--------------AUUUGUGGCGGg -5'
3130 5' -46.5 NC_001493.1 + 94755 0.67 0.999633
Target:  5'- cCGUGuuCCGuAAAGUGgugugcccgucCACCGCCCg -3'
miRNA:   3'- aGCAC--GGC-UUUUAUauuu-------GUGGCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.