miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31300 5' -61.3 NC_006623.1 + 129705 0.72 0.309208
Target:  5'- gGGAGGAACCauccaagagaacCUGGCGGUGCUCGcGAa -3'
miRNA:   3'- gCCUCCUUGG------------GACCGCCGUGGGU-CUa -5'
31300 5' -61.3 NC_006623.1 + 139941 0.68 0.517458
Target:  5'- gCGGGGGAuaGCaaaUGGCGGCgGCgCCGGAg -3'
miRNA:   3'- -GCCUCCU--UGgg-ACCGCCG-UG-GGUCUa -5'
31300 5' -61.3 NC_006623.1 + 128965 0.68 0.536663
Target:  5'- uGGcaauGGAuCCCUGGUGcuGUACCCAGGg -3'
miRNA:   3'- gCCu---CCUuGGGACCGC--CGUGGGUCUa -5'
31300 5' -61.3 NC_006623.1 + 57457 0.68 0.546359
Target:  5'- uGGA--AGCCCUGGCGaGUuCCCGGAc -3'
miRNA:   3'- gCCUccUUGGGACCGC-CGuGGGUCUa -5'
31300 5' -61.3 NC_006623.1 + 137552 0.67 0.595553
Target:  5'- cCGGAGGGagAUUCUGGCGGgCGuCgCAGAg -3'
miRNA:   3'- -GCCUCCU--UGGGACCGCC-GU-GgGUCUa -5'
31300 5' -61.3 NC_006623.1 + 124060 0.67 0.595553
Target:  5'- cCGGAGGGagAUUCUGGCGGgCGuCgCAGAg -3'
miRNA:   3'- -GCCUCCU--UGGGACCGCC-GU-GgGUCUa -5'
31300 5' -61.3 NC_006623.1 + 121671 0.68 0.517458
Target:  5'- gCGGGGGAuaGCaaaUGGCGGCgGCgCCGGAg -3'
miRNA:   3'- -GCCUCCU--UGgg-ACCGCCG-UG-GGUCUa -5'
31300 5' -61.3 NC_006623.1 + 1391 1.06 0.001424
Target:  5'- gCGGAGGAACCCUGGCGGCACCCAGAUa -3'
miRNA:   3'- -GCCUCCUUGGGACCGCCGUGGGUCUA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.