miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31301 3' -56.6 NC_006623.1 + 1635 1.07 0.003005
Target:  5'- gCGGAGGCUACUGCGUAGGAGCGGAUAa -3'
miRNA:   3'- -GCCUCCGAUGACGCAUCCUCGCCUAU- -5'
31301 3' -56.6 NC_006623.1 + 145643 0.71 0.608424
Target:  5'- aGGGGGacGCUGCGUcuuagAGGAGCGGc-- -3'
miRNA:   3'- gCCUCCgaUGACGCA-----UCCUCGCCuau -5'
31301 3' -56.6 NC_006623.1 + 115969 0.71 0.608424
Target:  5'- aGGGGGacGCUGCGUcuuagAGGAGCGGc-- -3'
miRNA:   3'- gCCUCCgaUGACGCA-----UCCUCGCCuau -5'
31301 3' -56.6 NC_006623.1 + 129554 0.7 0.639318
Target:  5'- gGGuGGCUACUgcuggaGCGUAGaGGGCGGu-- -3'
miRNA:   3'- gCCuCCGAUGA------CGCAUC-CUCGCCuau -5'
31301 3' -56.6 NC_006623.1 + 110065 0.69 0.710799
Target:  5'- gCGGGGGCUAauaaggacgUGCGUcGGAGCugcacGGAUAu -3'
miRNA:   3'- -GCCUCCGAUg--------ACGCAuCCUCG-----CCUAU- -5'
31301 3' -56.6 NC_006623.1 + 138523 0.67 0.814287
Target:  5'- gGGGGGUUguguuucGCUGCcgcGGAGUGGGUGa -3'
miRNA:   3'- gCCUCCGA-------UGACGcauCCUCGCCUAU- -5'
31301 3' -56.6 NC_006623.1 + 123089 0.67 0.814287
Target:  5'- gGGGGGUUguguuucGCUGCcgcGGAGUGGGUGa -3'
miRNA:   3'- gCCUCCGA-------UGACGcauCCUCGCCUAU- -5'
31301 3' -56.6 NC_006623.1 + 1422 0.66 0.840588
Target:  5'- gCGGaAGGCUG-UGCGaUAGGAGCcGAg- -3'
miRNA:   3'- -GCC-UCCGAUgACGC-AUCCUCGcCUau -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.