miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31301 5' -55.2 NC_006623.1 + 131224 0.66 0.917026
Target:  5'- --cGCUCGcGCUCCga--GCGCGGCg- -3'
miRNA:   3'- acaUGAGC-CGAGGauagCGUGUCGga -5'
31301 5' -55.2 NC_006623.1 + 8789 0.66 0.911065
Target:  5'- --gGgUUGGCUUCUGUUGCAgAGaCCUg -3'
miRNA:   3'- acaUgAGCCGAGGAUAGCGUgUC-GGA- -5'
31301 5' -55.2 NC_006623.1 + 13881 0.67 0.891043
Target:  5'- cGUACUCgcaaauauuaaauGGCUCCUGccCGgACAGCa- -3'
miRNA:   3'- aCAUGAG-------------CCGAGGAUa-GCgUGUCGga -5'
31301 5' -55.2 NC_006623.1 + 116435 0.67 0.87325
Target:  5'- cGUACggugacacagauaaUGGCUCCUguucAUCGCACGGUg- -3'
miRNA:   3'- aCAUGa-------------GCCGAGGA----UAGCGUGUCGga -5'
31301 5' -55.2 NC_006623.1 + 145177 0.67 0.87325
Target:  5'- cGUACggugacacagauaaUGGCUCCUguucAUCGCACGGUg- -3'
miRNA:   3'- aCAUGa-------------GCCGAGGA----UAGCGUGUCGga -5'
31301 5' -55.2 NC_006623.1 + 14211 0.67 0.862673
Target:  5'- cGUAUccacccCGGCUCCUGuccugucuUCGCACGGUg- -3'
miRNA:   3'- aCAUGa-----GCCGAGGAU--------AGCGUGUCGga -5'
31301 5' -55.2 NC_006623.1 + 63770 0.68 0.846837
Target:  5'- aGUGucgaGGCUCCUGUCGCAUGcGUCa -3'
miRNA:   3'- aCAUgag-CCGAGGAUAGCGUGU-CGGa -5'
31301 5' -55.2 NC_006623.1 + 144663 0.68 0.830196
Target:  5'- cGUGCUUGGCUgCUccgacgaggguGaCGUGCGGCCUu -3'
miRNA:   3'- aCAUGAGCCGAgGA-----------UaGCGUGUCGGA- -5'
31301 5' -55.2 NC_006623.1 + 144859 0.68 0.830196
Target:  5'- gGUACgaccuaccuccCGGCacUCCcgAUCGCGCGGCCc -3'
miRNA:   3'- aCAUGa----------GCCG--AGGa-UAGCGUGUCGGa -5'
31301 5' -55.2 NC_006623.1 + 116949 0.68 0.830196
Target:  5'- cGUGCUUGGCUgCUccgacgaggguGaCGUGCGGCCUu -3'
miRNA:   3'- aCAUGAGCCGAgGA-----------UaGCGUGUCGGA- -5'
31301 5' -55.2 NC_006623.1 + 137201 0.69 0.803861
Target:  5'- --cGCUCGGCaUCCUcUCGCGC-GUCg -3'
miRNA:   3'- acaUGAGCCG-AGGAuAGCGUGuCGGa -5'
31301 5' -55.2 NC_006623.1 + 116753 0.69 0.803861
Target:  5'- cGUACgaccuaccuccCGGCacUCCcgAUCGCGCGGCCc -3'
miRNA:   3'- aCAUGa----------GCCG--AGGa-UAGCGUGUCGGa -5'
31301 5' -55.2 NC_006623.1 + 1601 1.07 0.003834
Target:  5'- gUGUACUCGGCUCCUAUCGCACAGCCUu -3'
miRNA:   3'- -ACAUGAGCCGAGGAUAGCGUGUCGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.