miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31302 3' -53.3 NC_006623.1 + 1805 1.07 0.006237
Target:  5'- uCUCCGAACCCACCCAGAGACAAGAUAg -3'
miRNA:   3'- -GAGGCUUGGGUGGGUCUCUGUUCUAU- -5'
31302 3' -53.3 NC_006623.1 + 117856 0.67 0.945836
Target:  5'- aUCCcaucCCCACCCAGuagaGGACAAGuAUAu -3'
miRNA:   3'- gAGGcuu-GGGUGGGUC----UCUGUUC-UAU- -5'
31302 3' -53.3 NC_006623.1 + 124070 0.69 0.888191
Target:  5'- --aCGGACCUGCCCGGAGG-GAGAUu -3'
miRNA:   3'- gagGCUUGGGUGGGUCUCUgUUCUAu -5'
31302 3' -53.3 NC_006623.1 + 128151 0.66 0.950226
Target:  5'- uCUCCGAGCUgGCCCuGAacaaaaauGGCGGGGc- -3'
miRNA:   3'- -GAGGCUUGGgUGGGuCU--------CUGUUCUau -5'
31302 3' -53.3 NC_006623.1 + 131400 0.66 0.954373
Target:  5'- cCUCCGGcGCCgCGCUCGGAGcGCGAGcgGu -3'
miRNA:   3'- -GAGGCU-UGG-GUGGGUCUC-UGUUCuaU- -5'
31302 3' -53.3 NC_006623.1 + 137542 0.69 0.888191
Target:  5'- --aCGGACCUGCCCGGAGG-GAGAUu -3'
miRNA:   3'- gagGCUUGGGUGGGUCUCUgUUCUAu -5'
31302 3' -53.3 NC_006623.1 + 143755 0.67 0.945836
Target:  5'- aUCCcaucCCCACCCAGuagaGGACAAGuAUAu -3'
miRNA:   3'- gAGGcuu-GGGUGGGUC----UCUGUUC-UAU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.