miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31306 5' -48.7 NC_006623.1 + 2497 0.93 0.116891
Target:  5'- uUACCCAGaGAAAGUAUGCGAUGACUAu -3'
miRNA:   3'- -AUGGGUCcUUUUCAUACGCUACUGAU- -5'
31306 5' -48.7 NC_006623.1 + 111943 0.79 0.614906
Target:  5'- aACCCGGGggGGGUGuuuUGCGGggggGGCUAu -3'
miRNA:   3'- aUGGGUCCuuUUCAU---ACGCUa---CUGAU- -5'
31306 5' -48.7 NC_006623.1 + 115424 0.69 0.974692
Target:  5'- cGCCCGGu--AGGUAUGCGcgGACc- -3'
miRNA:   3'- aUGGGUCcuuUUCAUACGCuaCUGau -5'
31306 5' -48.7 NC_006623.1 + 146188 0.69 0.974692
Target:  5'- cGCCCGGu--AGGUAUGCGcgGACc- -3'
miRNA:   3'- aUGGGUCcuuUUCAUACGCuaCUGau -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.