miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31308 5' -54.8 NC_006623.1 + 122718 0.69 0.774235
Target:  5'- --cUUGCG-CgCCGG-CGCGGCUGCCg -3'
miRNA:   3'- uuuGACGUaGgGGUCaGUGUCGACGG- -5'
31308 5' -54.8 NC_006623.1 + 31012 0.68 0.823986
Target:  5'- gAGACUGCuUCUuugacggagccauagCCAGUUAUucguGCUGCCg -3'
miRNA:   3'- -UUUGACGuAGG---------------GGUCAGUGu---CGACGG- -5'
31308 5' -54.8 NC_006623.1 + 34588 0.67 0.884632
Target:  5'- aAAACUGCAcaCCaCCGGaaguuuUCACGGC-GCCa -3'
miRNA:   3'- -UUUGACGUa-GG-GGUC------AGUGUCGaCGG- -5'
31308 5' -54.8 NC_006623.1 + 138894 0.69 0.774235
Target:  5'- --cUUGCG-CgCCGG-CGCGGCUGCCg -3'
miRNA:   3'- uuuGACGUaGgGGUCaGUGUCGACGG- -5'
31308 5' -54.8 NC_006623.1 + 77773 0.68 0.837755
Target:  5'- gAGGCUGaCAU-UCUGGUCAC-GCUGCCa -3'
miRNA:   3'- -UUUGAC-GUAgGGGUCAGUGuCGACGG- -5'
31308 5' -54.8 NC_006623.1 + 68664 0.67 0.85425
Target:  5'- uGAACUcuuCAUUCCCGGcCG-AGCUGCCa -3'
miRNA:   3'- -UUUGAc--GUAGGGGUCaGUgUCGACGG- -5'
31308 5' -54.8 NC_006623.1 + 125351 0.67 0.869893
Target:  5'- cAGCUGUAUUCUCuGUCACAGgUuCCg -3'
miRNA:   3'- uUUGACGUAGGGGuCAGUGUCgAcGG- -5'
31308 5' -54.8 NC_006623.1 + 22864 0.66 0.910619
Target:  5'- -cGCgUGUAUCCauaaauuCCAGUCAgAGCUugaGCCg -3'
miRNA:   3'- uuUG-ACGUAGG-------GGUCAGUgUCGA---CGG- -5'
31308 5' -54.8 NC_006623.1 + 65650 0.66 0.923046
Target:  5'- uGGACUGCAacaugaCCUAGaaACAGCUGUa -3'
miRNA:   3'- -UUUGACGUag----GGGUCagUGUCGACGg -5'
31308 5' -54.8 NC_006623.1 + 2884 1.1 0.002297
Target:  5'- aAAACUGCAUCCCCAGUCACAGCUGCCa -3'
miRNA:   3'- -UUUGACGUAGGGGUCAGUGUCGACGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.