Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3131 | 3' | -58.7 | NC_001493.1 | + | 15067 | 0.67 | 0.730529 |
Target: 5'- gCCCGCACCCGCaccg---CUCCCUc- -3' miRNA: 3'- -GGGUGUGGGCGguccaaaGAGGGGcu -5' |
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3131 | 3' | -58.7 | NC_001493.1 | + | 30334 | 0.67 | 0.730529 |
Target: 5'- aCCCGaucccCCCGaCCAGGg----CCCCGAg -3' miRNA: 3'- -GGGUgu---GGGC-GGUCCaaagaGGGGCU- -5' |
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3131 | 3' | -58.7 | NC_001493.1 | + | 54829 | 0.67 | 0.720855 |
Target: 5'- aUCCAUACCgggucguggcagCGCCAGGcugugCCCCGGg -3' miRNA: 3'- -GGGUGUGG------------GCGGUCCaaagaGGGGCU- -5' |
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3131 | 3' | -58.7 | NC_001493.1 | + | 20408 | 0.67 | 0.711108 |
Target: 5'- gCCCG-AgCUGCCAGGUga--CCCCGAg -3' miRNA: 3'- -GGGUgUgGGCGGUCCAaagaGGGGCU- -5' |
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3131 | 3' | -58.7 | NC_001493.1 | + | 13475 | 0.68 | 0.701297 |
Target: 5'- aCCgCACGCCCGCag-----UUCCCCGAg -3' miRNA: 3'- -GG-GUGUGGGCGguccaaaGAGGGGCU- -5' |
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3131 | 3' | -58.7 | NC_001493.1 | + | 115646 | 0.68 | 0.691429 |
Target: 5'- aCCACACCCacuuCCAGGgcguaaCCCGAa -3' miRNA: 3'- gGGUGUGGGc---GGUCCaaagagGGGCU- -5' |
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3131 | 3' | -58.7 | NC_001493.1 | + | 8446 | 0.68 | 0.691429 |
Target: 5'- uCCUgugGCGCCgCGCCGGGg--CUCCCa-- -3' miRNA: 3'- -GGG---UGUGG-GCGGUCCaaaGAGGGgcu -5' |
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3131 | 3' | -58.7 | NC_001493.1 | + | 124000 | 0.68 | 0.691429 |
Target: 5'- uCCUgugGCGCCgCGCCGGGg--CUCCCa-- -3' miRNA: 3'- -GGG---UGUGG-GCGGUCCaaaGAGGGgcu -5' |
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3131 | 3' | -58.7 | NC_001493.1 | + | 202 | 0.68 | 0.691429 |
Target: 5'- aCCACACCCacuuCCAGGgcguaaCCCGAa -3' miRNA: 3'- gGGUGUGGGc---GGUCCaaagagGGGCU- -5' |
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3131 | 3' | -58.7 | NC_001493.1 | + | 91 | 0.68 | 0.691429 |
Target: 5'- aCCACACCCacuuCCAGGgcguaaCCCGAa -3' miRNA: 3'- gGGUGUGGGc---GGUCCaaagagGGGCU- -5' |
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3131 | 3' | -58.7 | NC_001493.1 | + | 239 | 0.68 | 0.691429 |
Target: 5'- aCCACACCCacuuCCAGGgcguaaCCCGAa -3' miRNA: 3'- gGGUGUGGGc---GGUCCaaagagGGGCU- -5' |
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3131 | 3' | -58.7 | NC_001493.1 | + | 165 | 0.68 | 0.691429 |
Target: 5'- aCCACACCCacuuCCAGGgcguaaCCCGAa -3' miRNA: 3'- gGGUGUGGGc---GGUCCaaagagGGGCU- -5' |
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3131 | 3' | -58.7 | NC_001493.1 | + | 115720 | 0.68 | 0.691429 |
Target: 5'- aCCACACCCacuuCCAGGgcguaaCCCGAa -3' miRNA: 3'- gGGUGUGGGc---GGUCCaaagagGGGCU- -5' |
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3131 | 3' | -58.7 | NC_001493.1 | + | 115793 | 0.68 | 0.691429 |
Target: 5'- aCCACACCCacuuCCAGGgcguaaCCCGAa -3' miRNA: 3'- gGGUGUGGGc---GGUCCaaagagGGGCU- -5' |
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3131 | 3' | -58.7 | NC_001493.1 | + | 133906 | 0.68 | 0.69044 |
Target: 5'- uCCCACACCCGCguGGccaccgugaggggCCCGAu -3' miRNA: 3'- -GGGUGUGGGCGguCCaaagag-------GGGCU- -5' |
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3131 | 3' | -58.7 | NC_001493.1 | + | 18352 | 0.68 | 0.69044 |
Target: 5'- uCCCACACCCGCguGGccaccgugaggggCCCGAu -3' miRNA: 3'- -GGGUGUGGGCGguCCaaagag-------GGGCU- -5' |
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3131 | 3' | -58.7 | NC_001493.1 | + | 17422 | 0.68 | 0.671561 |
Target: 5'- gUCCACGCgCGCCAGGgugCgggcaCCCCc- -3' miRNA: 3'- -GGGUGUGgGCGGUCCaaaGa----GGGGcu -5' |
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3131 | 3' | -58.7 | NC_001493.1 | + | 132976 | 0.68 | 0.671561 |
Target: 5'- gUCCACGCgCGCCAGGgugCgggcaCCCCc- -3' miRNA: 3'- -GGGUGUGgGCGGUCCaaaGa----GGGGcu -5' |
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3131 | 3' | -58.7 | NC_001493.1 | + | 115757 | 0.68 | 0.651569 |
Target: 5'- aCCACACCCacuCCAGGgcguaaCCCGAa -3' miRNA: 3'- gGGUGUGGGc--GGUCCaaagagGGGCU- -5' |
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3131 | 3' | -58.7 | NC_001493.1 | + | 120117 | 0.69 | 0.637536 |
Target: 5'- gCCGCGCCC-CCGGGUgugcccaaaCCCGAa -3' miRNA: 3'- gGGUGUGGGcGGUCCAaagag----GGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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