miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3131 5' -52.7 NC_001493.1 + 130185 0.66 0.972319
Target:  5'- uUGUCGGGGGcgaguGgAUGGGc-GCGGGu -3'
miRNA:   3'- -ACAGCUCCCau---UgUAUCCuaCGCCCu -5'
3131 5' -52.7 NC_001493.1 + 14630 0.66 0.972319
Target:  5'- uUGUCGGGGGcgaguGgAUGGGc-GCGGGu -3'
miRNA:   3'- -ACAGCUCCCau---UgUAUCCuaCGCCCu -5'
3131 5' -52.7 NC_001493.1 + 130465 0.66 0.972319
Target:  5'- ---gGAGGG-AGCGgugcGGGUGCGGGc -3'
miRNA:   3'- acagCUCCCaUUGUau--CCUACGCCCu -5'
3131 5' -52.7 NC_001493.1 + 14911 0.66 0.972319
Target:  5'- ---gGAGGG-AGCGgugcGGGUGCGGGc -3'
miRNA:   3'- acagCUCCCaUUGUau--CCUACGCCCu -5'
3131 5' -52.7 NC_001493.1 + 106630 0.66 0.966189
Target:  5'- cGUgGGGGGUGACc----AUGUGGGAa -3'
miRNA:   3'- aCAgCUCCCAUUGuauccUACGCCCU- -5'
3131 5' -52.7 NC_001493.1 + 133011 0.66 0.96064
Target:  5'- gGUCGAGGGUcccacgggccuugauAACcuugAGGAcGUGGGc -3'
miRNA:   3'- aCAGCUCCCA---------------UUGua--UCCUaCGCCCu -5'
3131 5' -52.7 NC_001493.1 + 17457 0.66 0.96064
Target:  5'- gGUCGAGGGUcccacgggccuugauAACcuugAGGAcGUGGGc -3'
miRNA:   3'- aCAGCUCCCA---------------UUGua--UCCUaCGCCCu -5'
3131 5' -52.7 NC_001493.1 + 9250 0.67 0.946836
Target:  5'- cGUCGucGGGacagGACcgGGGAgGCGGGc -3'
miRNA:   3'- aCAGCu-CCCa---UUGuaUCCUaCGCCCu -5'
3131 5' -52.7 NC_001493.1 + 22033 0.67 0.946836
Target:  5'- gUGUCGAGGG------AGGAUGUGGa- -3'
miRNA:   3'- -ACAGCUCCCauuguaUCCUACGCCcu -5'
3131 5' -52.7 NC_001493.1 + 124804 0.67 0.946836
Target:  5'- cGUCGucGGGacagGACcgGGGAgGCGGGc -3'
miRNA:   3'- aCAGCu-CCCa---UUGuaUCCUaCGCCCu -5'
3131 5' -52.7 NC_001493.1 + 57706 0.67 0.937384
Target:  5'- --aCGAGGccGUGAcCGUGcGGAUGCGGGc -3'
miRNA:   3'- acaGCUCC--CAUU-GUAU-CCUACGCCCu -5'
3131 5' -52.7 NC_001493.1 + 130550 0.68 0.909326
Target:  5'- -cUCGGGGGUgcGAUcgAGGccGCGGGu -3'
miRNA:   3'- acAGCUCCCA--UUGuaUCCuaCGCCCu -5'
3131 5' -52.7 NC_001493.1 + 14995 0.68 0.909326
Target:  5'- -cUCGGGGGUgcGAUcgAGGccGCGGGu -3'
miRNA:   3'- acAGCUCCCA--UUGuaUCCuaCGCCCu -5'
3131 5' -52.7 NC_001493.1 + 12138 0.68 0.908072
Target:  5'- uUGUCGcGGGUugcaaaaccgauGCGUcgaGGGAgGCGGGAa -3'
miRNA:   3'- -ACAGCuCCCAu-----------UGUA---UCCUaCGCCCU- -5'
3131 5' -52.7 NC_001493.1 + 127693 0.68 0.908072
Target:  5'- uUGUCGcGGGUugcaaaaccgauGCGUcgaGGGAgGCGGGAa -3'
miRNA:   3'- -ACAGCuCCCAu-----------UGUA---UCCUaCGCCCU- -5'
3131 5' -52.7 NC_001493.1 + 91511 0.69 0.902956
Target:  5'- --aCGGGGGcguccgguccgUGACAUGGGGccggUGCGGGu -3'
miRNA:   3'- acaGCUCCC-----------AUUGUAUCCU----ACGCCCu -5'
3131 5' -52.7 NC_001493.1 + 123750 0.7 0.859667
Target:  5'- --cCGAGcGGUGACGaAGGAggGCGGGc -3'
miRNA:   3'- acaGCUC-CCAUUGUaUCCUa-CGCCCu -5'
3131 5' -52.7 NC_001493.1 + 8196 0.7 0.859667
Target:  5'- --cCGAGcGGUGACGaAGGAggGCGGGc -3'
miRNA:   3'- acaGCUC-CCAUUGUaUCCUa-CGCCCu -5'
3131 5' -52.7 NC_001493.1 + 84726 0.7 0.826371
Target:  5'- -cUCGGGGaUGACAUGGGcagGCGGGu -3'
miRNA:   3'- acAGCUCCcAUUGUAUCCua-CGCCCu -5'
3131 5' -52.7 NC_001493.1 + 38348 0.71 0.799401
Target:  5'- gUGUUaGAGGGUuguugcuacAugAUAGGAagaaaUGCGGGAu -3'
miRNA:   3'- -ACAG-CUCCCA---------UugUAUCCU-----ACGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.