miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31312 5' -52.3 NC_006623.1 + 54076 0.66 0.980416
Target:  5'- aCCAUcAGAuUCgCAUuuUACCGCUCAGAc -3'
miRNA:   3'- gGGUA-UCUuAGgGUG--GUGGCGAGUUU- -5'
31312 5' -52.3 NC_006623.1 + 62451 0.66 0.978103
Target:  5'- uCCCGUAGcAUUCgCACCcCCGCagGAAg -3'
miRNA:   3'- -GGGUAUCuUAGG-GUGGuGGCGagUUU- -5'
31312 5' -52.3 NC_006623.1 + 124861 0.66 0.970262
Target:  5'- aCUAUAGucacuuuuacaggCgCCAUCGCCGCUCAGAc -3'
miRNA:   3'- gGGUAUCuua----------G-GGUGGUGGCGAGUUU- -5'
31312 5' -52.3 NC_006623.1 + 134354 0.67 0.963451
Target:  5'- -aCGUAGAacAUCCCGCUGUCGUUCGGAc -3'
miRNA:   3'- ggGUAUCU--UAGGGUGGUGGCGAGUUU- -5'
31312 5' -52.3 NC_006623.1 + 123706 0.7 0.876032
Target:  5'- gUCCAc--AGUCCUACCGCCGCUgCGAc -3'
miRNA:   3'- -GGGUaucUUAGGGUGGUGGCGA-GUUu -5'
31312 5' -52.3 NC_006623.1 + 137906 0.7 0.876032
Target:  5'- gUCCAc--AGUCCUACCGCCGCUgCGAc -3'
miRNA:   3'- -GGGUaucUUAGGGUGGUGGCGA-GUUu -5'
31312 5' -52.3 NC_006623.1 + 138253 0.71 0.844429
Target:  5'- aCCCGUGcAAUCCC-CCGCCaaaauggugaGCUCAGGg -3'
miRNA:   3'- -GGGUAUcUUAGGGuGGUGG----------CGAGUUU- -5'
31312 5' -52.3 NC_006623.1 + 123359 0.71 0.844429
Target:  5'- aCCCGUGcAAUCCC-CCGCCaaaauggugaGCUCAGGg -3'
miRNA:   3'- -GGGUAUcUUAGGGuGGUGG----------CGAGUUU- -5'
31312 5' -52.3 NC_006623.1 + 139142 0.73 0.752222
Target:  5'- cUCCGUcGAcgCCCACCGCgGcCUCAAAc -3'
miRNA:   3'- -GGGUAuCUuaGGGUGGUGgC-GAGUUU- -5'
31312 5' -52.3 NC_006623.1 + 122470 0.73 0.752222
Target:  5'- cUCCGUcGAcgCCCACCGCgGcCUCAAAc -3'
miRNA:   3'- -GGGUAuCUuaGGGUGGUGgC-GAGUUU- -5'
31312 5' -52.3 NC_006623.1 + 117023 0.73 0.752222
Target:  5'- gUCAUAGggUCCCuGCCGCUGC-CAu- -3'
miRNA:   3'- gGGUAUCuuAGGG-UGGUGGCGaGUuu -5'
31312 5' -52.3 NC_006623.1 + 144589 0.73 0.752222
Target:  5'- gUCAUAGggUCCCuGCCGCUGC-CAu- -3'
miRNA:   3'- gGGUAUCuuAGGG-UGGUGGCGaGUuu -5'
31312 5' -52.3 NC_006623.1 + 144408 0.74 0.669853
Target:  5'- gCCGUAGGAU-CCACgGCCGCUCc-- -3'
miRNA:   3'- gGGUAUCUUAgGGUGgUGGCGAGuuu -5'
31312 5' -52.3 NC_006623.1 + 117204 0.74 0.669853
Target:  5'- gCCGUAGGAU-CCACgGCCGCUCc-- -3'
miRNA:   3'- gGGUAUCUUAgGGUGgUGGCGAGuuu -5'
31312 5' -52.3 NC_006623.1 + 8970 1.08 0.006207
Target:  5'- gCCCAUAGAAUCCCACCACCGCUCAAAa -3'
miRNA:   3'- -GGGUAUCUUAGGGUGGUGGCGAGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.