miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31313 3' -51.9 NC_006623.1 + 12377 1.1 0.006031
Target:  5'- gAGAUCAGCAACGGCCCGGACAAAAGAu -3'
miRNA:   3'- -UCUAGUCGUUGCCGGGCCUGUUUUCU- -5'
31313 3' -51.9 NC_006623.1 + 45059 0.75 0.62756
Target:  5'- aAGAUCAGCcuuuAACGGgaugCUGGACAAAGGAu -3'
miRNA:   3'- -UCUAGUCG----UUGCCg---GGCCUGUUUUCU- -5'
31313 3' -51.9 NC_006623.1 + 38075 0.74 0.721903
Target:  5'- gAGAgUCAGCAACcGUCCGGGCAAAc-- -3'
miRNA:   3'- -UCU-AGUCGUUGcCGGGCCUGUUUucu -5'
31313 3' -51.9 NC_006623.1 + 20195 0.73 0.771886
Target:  5'- uGA-CGGCAAUGGCCCaGGCAGAAu- -3'
miRNA:   3'- uCUaGUCGUUGCCGGGcCUGUUUUcu -5'
31313 3' -51.9 NC_006623.1 + 116092 0.72 0.827361
Target:  5'- cGGGUUgAGCAGCGGUCCGG-CGGGAa- -3'
miRNA:   3'- -UCUAG-UCGUUGCCGGGCCuGUUUUcu -5'
31313 3' -51.9 NC_006623.1 + 145520 0.72 0.827361
Target:  5'- cGGGUUgAGCAGCGGUCCGG-CGGGAa- -3'
miRNA:   3'- -UCUAG-UCGUUGCCGGGCCuGUUUUcu -5'
31313 3' -51.9 NC_006623.1 + 111829 0.69 0.922217
Target:  5'- ----uGGCAGCGGCCCGG-CGGGGc- -3'
miRNA:   3'- ucuagUCGUUGCCGGGCCuGUUUUcu -5'
31313 3' -51.9 NC_006623.1 + 55065 0.69 0.922217
Target:  5'- uAGAUCAGCA--GGCCCGcAUAGcGGAu -3'
miRNA:   3'- -UCUAGUCGUugCCGGGCcUGUUuUCU- -5'
31313 3' -51.9 NC_006623.1 + 1242 0.69 0.927807
Target:  5'- cAGAUCAGac-CGGCCUGGcACGGAcccccAGAg -3'
miRNA:   3'- -UCUAGUCguuGCCGGGCC-UGUUU-----UCU- -5'
31313 3' -51.9 NC_006623.1 + 114770 0.69 0.933142
Target:  5'- ---cCAGCGACGGCCCuaaaGGaaGCGGAAGu -3'
miRNA:   3'- ucuaGUCGUUGCCGGG----CC--UGUUUUCu -5'
31313 3' -51.9 NC_006623.1 + 146841 0.68 0.938221
Target:  5'- ---gCAGCGACGGCCCuaaaGGaaGCGGAAGu -3'
miRNA:   3'- ucuaGUCGUUGCCGGG----CC--UGUUUUCu -5'
31313 3' -51.9 NC_006623.1 + 137448 0.68 0.955621
Target:  5'- ---cCGGCAGCGGCCgccgacgCGGcgaGCGGAAGAc -3'
miRNA:   3'- ucuaGUCGUUGCCGG-------GCC---UGUUUUCU- -5'
31313 3' -51.9 NC_006623.1 + 27830 0.67 0.966819
Target:  5'- cAGAUUuuaCAACGGCCgGGGCGcAAGu -3'
miRNA:   3'- -UCUAGuc-GUUGCCGGgCCUGUuUUCu -5'
31313 3' -51.9 NC_006623.1 + 27054 0.67 0.972883
Target:  5'- gAGAaauugCAGCGGCGGCacuaCCGGcCAGAaaAGAu -3'
miRNA:   3'- -UCUa----GUCGUUGCCG----GGCCuGUUU--UCU- -5'
31313 3' -51.9 NC_006623.1 + 124827 0.66 0.978103
Target:  5'- aGGAUguGCAGacccgugauuCGGUUCGGugAGGGGGg -3'
miRNA:   3'- -UCUAguCGUU----------GCCGGGCCugUUUUCU- -5'
31313 3' -51.9 NC_006623.1 + 101636 0.66 0.980416
Target:  5'- cAGG--GGCAGCGGCCCauugauaauGCAGAAGAu -3'
miRNA:   3'- -UCUagUCGUUGCCGGGcc-------UGUUUUCU- -5'
31313 3' -51.9 NC_006623.1 + 137991 0.66 0.980416
Target:  5'- ---cCAcGCGGCGGCCCGGGgAAu--- -3'
miRNA:   3'- ucuaGU-CGUUGCCGGGCCUgUUuucu -5'
31313 3' -51.9 NC_006623.1 + 136582 0.66 0.980416
Target:  5'- cAGAggGGCcgaagacGCGGCCgCGGGCAAGAa- -3'
miRNA:   3'- -UCUagUCGu------UGCCGG-GCCUGUUUUcu -5'
31313 3' -51.9 NC_006623.1 + 123621 0.66 0.980416
Target:  5'- ---cCAcGCGGCGGCCCGGGgAAu--- -3'
miRNA:   3'- ucuaGU-CGUUGCCGGGCCUgUUuucu -5'
31313 3' -51.9 NC_006623.1 + 122125 0.66 0.984488
Target:  5'- gGGAUguGUcuagaggagAGCGGUCCGGGCGGu--- -3'
miRNA:   3'- -UCUAguCG---------UUGCCGGGCCUGUUuucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.